User: Balasubramanian Ganesan

gravatar for Balasubramanian Ganesan
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11 years ago
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Posts by Balasubramanian Ganesan

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Comment: C: CDF properties
... Thank you very much. I hoped that this was already resolved and is very likely. On Jun 4, 2008, at 5:06 AM, lgautier at altern.org wrote: > > > Check: > http://thread.gmane.org/gmane.science.biology.informatics.conductor/ > 14854 > > > >> Hello members >> I have ...
written 11.0 years ago by Balasubramanian Ganesan • 70
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CDF properties
... Hello members I have a custom chip where one probe often belongs in multiple probe sets. To that end I want to know if the "one probe in one probeset only or in multiple probesets" parameter is set within the cdf file. Is there a regular R function that will get me this information? Balasubramanian ...
cdf probe written 11.1 years ago by Balasubramanian Ganesan • 70 • updated 11.0 years ago by lgautier@altern.org • 950
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Comment: C: Webbioc error exprSet vs expressionSet
... Hi Martin Thanks for the note. No, it is NOT bioconductor making exprSet objects. But our old version (R2.1) is configured to create and re-read only exprSet objects, and cannot read ExpressionSet objects as well. I just added another post, may be look at that. I think it has to do with Perl/RSPerl. ...
written 11.2 years ago by Balasubramanian Ganesan • 70
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Answer: A: Webbioc error exprSet vs expressionSet
... Forgot to add. We are using R on Mac OS X Panther 10.3.9. One thought did occur to me - is it a Perl parser issue, as at the earlier steps, it is Perl which is involved in reading in the files? In which case, I did update RSPerl as well, but is this issue already resolved in RSPerl? On Apr 3, 2008 ...
written 11.2 years ago by Balasubramanian Ganesan • 70
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Webbioc error exprSet vs expressionSet
... Dear all I am attaching the CGI scripts that we typically use for webbioc on a shared computer. I finally had the guts to upgrade R in our machine after running 2.1 for a really long time, as it still was facilitating analysis for naive users. I finished completely building R from source and instal ...
preprocessing multtest webbioc written 11.2 years ago by Balasubramanian Ganesan • 70
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Docs on Upgrading R in Panther
... Dear All We have an Apple Bioinformatics cluster that is still running Panther (OS X 10.3.9). Currently, the latest R version we have on it is 2.2.1. Is it possible to upgrade R using some new binaries or is it best/ possible to be built from source? Is there any documentation available on this ques ...
written 11.2 years ago by Balasubramanian Ganesan • 70 • updated 11.2 years ago by Hervé Pagès ♦♦ 14k
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Why is my matrix transposed?
... Dear all I am running R-2.6.2 on a PowerPC PowerBook-G4. I am using the following method to normalize my data. >library(affy) >eset=justRMA() I used two different ways of writing out the eset data. >write.table(eset,file="abc.txt",sep="\t") # produces a table with probe IDs as cols and ...
probe written 11.3 years ago by Balasubramanian Ganesan • 70 • updated 11.3 years ago by James W. MacDonald ♦ 50k

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