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User: Balasubramanian Ganesan
- Reputation:
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- Last seen:
- 10 years, 8 months ago
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- 10 years, 11 months ago
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Posts by Balasubramanian Ganesan
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Comment:
C: CDF properties
... Thank you very much.
I hoped that this was already resolved and is very likely.
On Jun 4, 2008, at 5:06 AM, lgautier at altern.org wrote:
>
>
> Check:
> http://thread.gmane.org/gmane.science.biology.informatics.conductor/
> 14854
>
>
>
>> Hello members
>> I have ...
written 10.7 years ago by
Balasubramanian Ganesan • 70
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... Hello members
I have a custom chip where one probe often belongs in multiple probe
sets.
To that end I want to know if the "one probe in one probeset only or
in multiple probesets" parameter is set within the cdf file.
Is there a regular R function that will get me this information?
Balasubramanian ...
written 10.7 years ago by
Balasubramanian Ganesan • 70
• updated
10.7 years ago by
lgautier@altern.org • 950
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... Hi Martin
Thanks for the note.
No, it is NOT bioconductor making exprSet objects. But our old
version (R2.1) is configured to create and re-read only exprSet
objects, and cannot read ExpressionSet objects as well.
I just added another post, may be look at that. I think it has to do
with Perl/RSPerl. ...
written 10.9 years ago by
Balasubramanian Ganesan • 70
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... Forgot to add.
We are using R on Mac OS X Panther 10.3.9.
One thought did occur to me - is it a Perl parser issue, as at the
earlier steps, it is Perl which is involved in reading in the files?
In which case, I did update RSPerl as well, but is this issue already
resolved in RSPerl?
On Apr 3, 2008 ...
written 10.9 years ago by
Balasubramanian Ganesan • 70
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... Dear all
I am attaching the CGI scripts that we typically use for webbioc on
a shared computer.
I finally had the guts to upgrade R in our machine after running 2.1
for a really long time, as it still was facilitating analysis for
naive users.
I finished completely building R from source and instal ...
written 10.9 years ago by
Balasubramanian Ganesan • 70
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... Dear All
We have an Apple Bioinformatics cluster that is still running Panther
(OS X 10.3.9). Currently, the latest R version we have on it is 2.2.1.
Is it possible to upgrade R using some new binaries or is it best/
possible to be built from source? Is there any documentation
available on this ques ...
written 10.9 years ago by
Balasubramanian Ganesan • 70
• updated
10.9 years ago by
Hervé Pagès ♦♦ 13k
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... Dear all
I am running R-2.6.2 on a PowerPC PowerBook-G4.
I am using the following method to normalize my data.
>library(affy)
>eset=justRMA()
I used two different ways of writing out the eset data.
>write.table(eset,file="abc.txt",sep="\t") # produces a table with
probe IDs as cols and ...
written 11.0 years ago by
Balasubramanian Ganesan • 70
• updated
11.0 years ago by
James W. MacDonald ♦ 49k
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