User: Pankaj Chopra

gravatar for Pankaj Chopra
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10 years, 2 months ago
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11 years, 1 month ago
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p******@ncsu.edu

Posts by Pankaj Chopra

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Answer: A: Error in HyperGTest with GOHyperGParams class
... Would it be possible to get a reproducible example? thanks! Mayte Suarez-Farinas wrote: > Hi all, > I recently updated to R 2.8. I have a list of significant genes and > want to do hypergeometric test to check for over-representing pathways > and ontologies. > For KEGG it works fine ...
written 10.2 years ago by Pankaj Chopra20
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Answer: A: Reporting results of HyperGTest
... Might be worth trying 'GOGraph' in the GOstats package. I think I was able to do it using it with the Rgraphviz (?makeNodeAttrs) package. Paolo Innocenti wrote: > Hi all, > > I performed two separate HyperGTest (pkg:GOstats) on different list of > DE genes (trt1 vs control and trt2 ...
written 11.1 years ago by Pankaj Chopra20

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