User: Pankaj Chopra
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- 11 years, 5 months ago
Posts by Pankaj Chopra
... Would it be possible to get a reproducible example? thanks! Mayte Suarez-Farinas wrote: > Hi all, > I recently updated to R 2.8. I have a list of significant genes and > want to do hypergeometric test to check for over-representing pathways > and ontologies. > For KEGG it works fine ...
... Might be worth trying 'GOGraph' in the GOstats package. I think I was able to do it using it with the Rgraphviz (?makeNodeAttrs) package. Paolo Innocenti wrote: > Hi all, > > I performed two separate HyperGTest (pkg:GOstats) on different list of > DE genes (trt1 vs control and trt2 ...
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