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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
2.1 years ago Jenny Drnevich ★ 2.0k
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1.2k
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Comment: Comment: Reopened: 'Omics data analyst for HPCBio, University of Illinois
2.8 years ago Jenny Drnevich ★ 2.0k
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6.3k
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Comment: Comment: Easy way to turn OrgDb object from AnnotationHub into package?
3.3 years ago Jenny Drnevich ★ 2.0k
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0
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1.5k
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Comment: Comment: 'Omics data analyst for HPCBio, University of Illinois
3.4 years ago Jenny Drnevich ★ 2.0k
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0
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3.2k
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Comment: Comment: Problem in kegga() and others getting data from KEGG after switch from http to h
3.5 years ago Jenny Drnevich ★ 2.0k
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0
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2.0k
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Comment: C: Can't select GO from AnnotationHub orgDB packages
5.4 years ago Jenny Drnevich ★ 2.0k
1
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0
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3.4k
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Comment: C: How to manage AnnotationHub snapshots / most OrgDB are missing?
5.6 years ago Jenny Drnevich ★ 2.0k
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1
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2.0k
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Comment: C: Issues with normalizing viral-infected single cell data
5.7 years ago Jenny Drnevich ★ 2.0k
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0
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2.0k
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Comment: C: Issues with normalizing viral-infected single cell data
5.7 years ago Jenny Drnevich ★ 2.0k
0
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1
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1.6k
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Comment: C: BioC2018 Workshop book not linked from Bioconductor.org?
6.7 years ago Jenny Drnevich ★ 2.0k
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1
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3.2k
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Comment: C: Change default prior.count in glmFit() to match cpm(), aveLogCPM(), etc?
7.1 years ago Jenny Drnevich ★ 2.0k
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2.3k
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Comment: C: Bioconductor 3.8 is released
updated 7.1 years ago by 25k • written 7.1 years ago by ★ 2.0k
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1
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2.3k
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Comment: C: Bioconductor 3.8 is released
7.1 years ago Jenny Drnevich ★ 2.0k
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0
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6.3k
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Comment: C: Easy way to turn OrgDb object from AnnotationHub into package?
7.3 years ago Jenny Drnevich ★ 2.0k
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0
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1.5k
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Comment: C: csaw: how to hack filtering windows by negative input controls?
7.4 years ago Jenny Drnevich ★ 2.0k
0
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1
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2.9k
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Comment: C: bug in estimateDisp() or mistake in documentation?
updated 7.5 years ago by 53k • written 11.4 years ago by ★ 2.0k
1
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0
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1.5k
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Comment: C: Hotels for BioC 2018?
7.7 years ago Jenny Drnevich ★ 2.0k
0
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1
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1.5k
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Comment: C: Hotels for BioC 2018?
updated 7.7 years ago by 25k • written 7.7 years ago by ★ 2.0k
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0
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1.2k
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Comment: C: Support site search not finding posts?
7.8 years ago Jenny Drnevich ★ 2.0k
0
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0
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3.8k
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Comment: C: Problem with tximport(reader = read_tsv) and workaround
8.0 years ago Jenny Drnevich ★ 2.0k
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0
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3.3k
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Comment: C: EGSEA generateReport() error "no adj nodes"
8.0 years ago Jenny Drnevich ★ 2.0k
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0
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3.3k
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Comment: C: EGSEA generateReport() error "no adj nodes"
8.0 years ago Jenny Drnevich ★ 2.0k
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0
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3.3k
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Comment: C: EGSEA generateReport() error "no adj nodes"
8.0 years ago Jenny Drnevich ★ 2.0k
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0
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3.4k
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Comment: C: Problem using biocLite() to update packages
8.1 years ago Jenny Drnevich ★ 2.0k
0
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1
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2.3k
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Comment: C: GO-terms delivered by GOstats hyperGTest() do not exist in my universe
8.1 years ago Jenny Drnevich ★ 2.0k
0
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0
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3.1k
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Comment: C: tximport recommendation for limma-trend downstream analysis?
8.2 years ago Jenny Drnevich ★ 2.0k
0
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1
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3.1k
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Comment: C: tximport recommendation for limma-trend downstream analysis?
8.2 years ago Jenny Drnevich ★ 2.0k
0
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0
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1.9k
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Comment: C: prior.prob has opposite effects in goana and kegga?
8.4 years ago Jenny Drnevich ★ 2.0k
0
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1
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2.8k
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Comment: C: raw probe set expression data and masking questions
8.7 years ago Jenny Drnevich ★ 2.0k
1
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0
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2.2k
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Comment: C: goseq Error: could not find function "supportedOrganisms"
8.7 years ago Jenny Drnevich ★ 2.0k
0
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1
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2.8k
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Comment: C: raw probe set expression data and masking questions
8.7 years ago Jenny Drnevich ★ 2.0k
0
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1
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6.3k
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Comment: C: Easy way to turn OrgDb object from AnnotationHub into package?
8.9 years ago Jenny Drnevich ★ 2.0k
0
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1
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6.3k
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Comment: C: Easy way to turn OrgDb object from AnnotationHub into package?
8.9 years ago Jenny Drnevich ★ 2.0k
0
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0
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1.6k
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Comment: C: How to define contrasts for expression changes over time
8.9 years ago Jenny Drnevich ★ 2.0k
0
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0
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1.8k
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Comment: C: Problem after upgrading from affycoretools 1.46.1 to 1.46.3; "vfs customization
8.9 years ago Jenny Drnevich ★ 2.0k
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0
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1.9k
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Comment: C: How to remove nested batch effects with removeBatchEffect?
9.2 years ago Jenny Drnevich ★ 2.0k
0
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0
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5.2k
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Comment: C: voom + removeBatchEffect + gene clustering
9.2 years ago Jenny Drnevich ★ 2.0k
1
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1
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5.2k
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Comment: C: voom + removeBatchEffect + gene clustering
9.2 years ago Jenny Drnevich ★ 2.0k
0
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0
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3.8k
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Comment: C: Problem with tximport(reader = read_tsv) and workaround
9.2 years ago Jenny Drnevich ★ 2.0k
0
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1
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3.8k
views
Comment: C: Problem with tximport(reader = read_tsv) and workaround
9.2 years ago Jenny Drnevich ★ 2.0k
0
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0
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1.8k
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Comment: C: Problems with running limma voom on subsets of genes from WGCNA modules?
9.3 years ago Jenny Drnevich ★ 2.0k
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0
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3.1k
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Comment: C: Find if a covariate has effect on gene expression level using edgeR and DESeq2
9.3 years ago Jenny Drnevich ★ 2.0k
0
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1
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2.0k
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Comment: C: AnnotationHub's NCBI OrgDB have older EGSOURCEDATE than org.Xy.eg.db?
9.3 years ago Jenny Drnevich ★ 2.0k
0
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0
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1.5k
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Comment: C: bug in Glimma - anno can't have T/F
9.5 years ago Jenny Drnevich ★ 2.0k
0
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0
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1.4k
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Comment: C: Missing binaries for AnnotationData packages?
updated 9.8 years ago by 68k • written 9.8 years ago by ★ 2.0k
0
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0
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1.4k
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Comment: C: Missing binaries for AnnotationData packages?
updated 9.8 years ago by ★ 8.2k • written 9.8 years ago by ★ 2.0k
0
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0
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7.5k
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Comment: C: sva + egdeR - differential expression analysis - RNA-seq data
10.0 years ago Jenny Drnevich ★ 2.0k
0
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0
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12k
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Comment: C: trouble using select() to get all GO terms when have duplicate query IDs
updated 10.1 years ago by 25k • written 10.1 years ago by ★ 2.0k
0
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1
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1.9k
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Comment: C: rtracklayer v1.30.0 can no longer import gff files
10.1 years ago Jenny Drnevich ★ 2.0k
0
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0
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2.8k
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Comment: C: design matrix for cross-over + repeated measures in limma?
10.2 years ago Jenny Drnevich ★ 2.0k
114 results • Page 1 of 3
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