User: Karl Forner
Karl Forner • 70
- Reputation:
- 70
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- Location:
- Switzerland
- Last seen:
- 2 years, 5 months ago
- Joined:
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- Email:
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Posts by Karl Forner
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... please ignore this post.
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written 2.5 years ago by
Karl Forner • 70
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... Hello,
With the latest bioconductor/release_core docker, the apt system seems to be broken.
Running:
%docker run --rm -ti bioconductor/release_core bash
then
# apt-get update
Get:1 http://deb.debian.org/debian testing InRelease [175 kB]
...
E: Could not open file /var/lib/apt/lists/http.debian ...
written 2.6 years ago by
Karl Forner • 70
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... Hello,
Running:
docker run -ti bioconductor/release_core:20160630 R
I get:
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
...
Bioconductor version 3.2 (BiocInstaller 1.20.3), ?biocLite for help
Warning message:
BiocInstaller version 3.2 is too old for R version 3.3.1; see
https://bioco ...
written 3.0 years ago by
Karl Forner • 70
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... Good, thanks.
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written 3.5 years ago by
Karl Forner • 70
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... I was surprised running this:
docker run -ti --rm bioconductor/release_microarray:3.2 R -q -e '1'
Bioconductor version 3.1 (BiocInstaller 1.18.3
I was expecting Bioconductor version 3.2.
Is this normal ?
Thanks.
...
written 3.6 years ago by
Karl Forner • 70
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... Is it planned ? I mean do you intend to implement them ?
best,
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written 3.7 years ago by
Karl Forner • 70
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... Great !
What about the docker containing all the packages "which either needs compilation or has a SystemRequirement" ?
Thanks,
Karl
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written 3.7 years ago by
Karl Forner • 70
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... Yes, indeed that could be extremely useful !
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written 4.0 years ago by
Karl Forner • 70
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... Thanks for your reply.
My use case for the release_all container would be to be sure to have the complete bioconductor platform, canonically installed so that I could build my platform upon it without surprises.
I guess it should not contain the annotation and experiment data packages (except mayb ...
written 4.0 years ago by
Karl Forner • 70
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... Hello,
I am very pleased that you provide docker images of bioconductor, I think this is a huge added value for your users.
I may have missed something, but it seems that they are some missing information in the docker tags.
From what I understood, there is no easy way to get a docker for one spe ...
written 4.1 years ago by
Karl Forner • 70
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