User: Karl Forner

gravatar for Karl Forner
Karl Forner70
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Location:
Switzerland
Last seen:
10 months, 3 weeks ago
Joined:
9 years, 5 months ago
Email:
k**********@gmail.com

Posts by Karl Forner

<prev • 15 results • page 1 of 2 • next >
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Answer: A: apt-get problems with latest bioconductor/release_core docker
... please ignore this post. ...
written 10 months ago by Karl Forner70
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apt-get problems with latest bioconductor/release_core docker
... Hello, With the latest bioconductor/release_core docker, the apt system seems to be broken. Running: %docker run --rm -ti bioconductor/release_core bash then # apt-get update Get:1 http://deb.debian.org/debian testing InRelease [175 kB] ... E: Could not open file /var/lib/apt/lists/http.debian ...
docker written 11 months ago by Karl Forner70
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bioconductor/release_core:20160630 - BiocInstaller version 3.2 is too old for R version 3.3.1
... Hello, Running: docker run -ti bioconductor/release_core:20160630 R I get: R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" ... Bioconductor version 3.2 (BiocInstaller 1.20.3), ?biocLite for help Warning message: BiocInstaller version 3.2 is too old for R version 3.3.1; see   https://bioco ...
bioconductor docker written 16 months ago by Karl Forner70
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Answer: A: confused about bioconductor/release_microarray:3.2 tag
... Good, thanks. ...
written 23 months ago by Karl Forner70
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confused about bioconductor/release_microarray:3.2 tag
... I was surprised running this: docker run -ti --rm bioconductor/release_microarray:3.2 R -q -e '1' Bioconductor version 3.1 (BiocInstaller 1.18.3 I was expecting Bioconductor version 3.2. Is this normal ? Thanks.       ...
microarray docker written 24 months ago by Karl Forner70
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Comment: C: Bioconductor docker tags and release versions
... Is it planned ? I mean do you intend to implement them ? best, ...
written 2.1 years ago by Karl Forner70
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Answer: A: Bioconductor docker tags and release versions
... Great ! What about the docker containing all the packages "which either needs compilation or has a SystemRequirement" ? Thanks, Karl ...
written 2.1 years ago by Karl Forner70
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Comment: C: Bioconductor docker tags and release versions
... Yes, indeed that could be extremely useful ! ...
written 2.4 years ago by Karl Forner70
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Answer: A: Bioconductor docker tags and release versions
... Thanks for your reply. My use case for the release_all container would be to be sure to have the complete bioconductor platform, canonically installed so that I could build my platform upon it without surprises. I guess it should not contain the annotation and experiment data packages (except mayb ...
written 2.4 years ago by Karl Forner70
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Bioconductor docker tags and release versions
... Hello, I am very pleased that you provide docker images of bioconductor, I think this is a huge added value for your users. I may have missed something, but it seems that they are some missing information in the docker tags. From what I understood, there is no easy way to get a docker for one spe ...
docker release written 2.5 years ago by Karl Forner70

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