User: Benjamin Lansdell

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Last seen:
11 years, 4 months ago
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11 years, 4 months ago
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l*******@wehi.edu.au

Posts by Benjamin Lansdell

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Comment: C: Drosophila tiling array background correction
... Thanks for your replies. Tobias, I'm hoping it won't come to creating everything manually but if it does thanks for the code! Steve, we seem to be having the same problem. I can use ReadAffy, and can even specify the package that I create using makePDpackage (which I outlined here http://article.gm ...
written 11.4 years ago by Benjamin Lansdell30
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Problem with makePDpackage in makePlatformDesign and getCdfInfo in affy
... Dear list, I have been working with a custom drosophila tiling array for which I have a .bpmap file and some .cel files. I have created a package using the makePlatformDesign package via: > makePDpackage("./antisense_untrimmed.bpmap", manufacturer = "affymetrix", type = "tiling", extra = list( ...
cdf affy gcrma oligo makeplatformdesign written 11.4 years ago by Benjamin Lansdell30
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Drosophila tiling array background correction
... Hi, I have been trying to analyse drosophila development tiling arrays using Bioconductor. In particular I would like to perform some form of background correction for probe affinities (such as GCRMA) and then quantile normalisation but have been unable to find any packages that can do so without a ...
cdf probe oligo written 11.4 years ago by Benjamin Lansdell30 • updated 11.4 years ago by Steve Lianoglou12k

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