User: Hui-Yi Chu

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Hui-Yi Chu160
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Posts by Hui-Yi Chu

<prev • 16 results • page 2 of 2 • next >
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Comment: C: limma2annaffy output and heatmap questions
... Hello Jim, >> Thank you for the answer of p.value! and sorry for no codes in mail. The >> followings are one example of my data and codes. >> >> *Example *(partially copied from my result table when coef=1, 1st >> probeID): >> t-statistic P-value Fold-change ...
written 11.1 years ago by Hui-Yi Chu160
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limma2annaffy output and heatmap questions
... Hi Jim, Thank you for the answer of p.value! and sorry for no codes in mail. The followings are one example of my data and codes. *Example *(partially copied from my result table when coef=1, 1st probeID): t-statistic P-value Fold-change mut.a mut.a wt1 wt2 108.84 0 ...
go yeast2 limma written 11.1 years ago by Hui-Yi Chu160
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affycoretools limma2annaffy output questions
... Hi everyone, Apologize first for probably simple question below. Thanks for Jim's help, I've got some html files from limma2annaffy function, however, I am not pretty sure how to interpret the result of "fold change". Please correct me if I am wrong. Based on my knowledge, after limma, for example ...
limma written 11.1 years ago by Hui-Yi Chu160 • updated 11.1 years ago by James W. MacDonald51k
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yeast2 package deprecation
... Hi everyone in list, I tried to use limma2annaffy function in "affycoretools" package, but got the message as following, can anybody tell me how to solve it? Thank you in advance!!! Hui-Yi Do you want to accept or change these values? [ a/c ]a Loading required package: yeast2 ******* Deprecati ...
annotation go yeast2 written 11.1 years ago by Hui-Yi Chu160 • updated 11.1 years ago by James W. MacDonald51k
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images of affyPLM package in R 2.7.2
... Dear list, I updated R from 2.6.2 to 2.7.2 recently but keep getting the error "figure margins too large" when plot pictures which never happened to me when using 2.6.2. Also, the legend disappears in R 2.7.2. After asking R mailing list, they think it's something specifically changed in image() of ...
written 11.1 years ago by Hui-Yi Chu160 • updated 11.1 years ago by Ben Bolstad1.2k
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heatmap and cdfenv problems
... Dear BioC list, After searching the BioC list and books and googling, I still cannot figure out the questions which are described below. Any suggestions will be really appreciated. 1. I have wt, mut-a, mut-b strains, each of them has 2 replicates. After implementation of heatmap_2 function in Heat ...
annotation go yeast2 cdf heatplus written 11.2 years ago by Hui-Yi Chu160

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