User: Scott Markel

gravatar for Scott Markel
Scott Markel50
Reputation:
50
Status:
New User
Location:
Canada
Last seen:
9 years, 11 months ago
Joined:
11 years, 3 months ago
Email:
s******@accelrys.com

Posts by Scott Markel

<prev • 5 results • page 1 of 1 • next >
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Windows binary for GEOquery (R 2.10.0)
... I attempted to use GEOquery in R 2.10.0 today. I'm running Windows XP. ====================== > source("http://bioconductor.org/biocLite.R") > biocLite("GEOquery") Using R version 2.10.0, biocinstall version 2.5.8. Installing Bioconductor version 2.5 packages: [1] "GEOquery" Please wait... ...
geoquery written 10.0 years ago by Scott Markel50 • updated 10.0 years ago by Keith Satterley450
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Answer: A: question about ontoCompare() performance change
... Seth, Thank you for your analysis and the initial pass at a replacement implementation. Much appreciated. Scott Scott Markel, Ph.D. Principal Bioinformatics Architect email: smarkel at accelrys.com Accelrys (SciTegic R&D) mobile: +1 858 205 3653 10188 Telesis Court, Suite 100 ...
written 10.0 years ago by Scott Markel50
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question about ontoCompare() performance change
... Just a quick FYI to anyone else using goTools' ontoCompare(). It looks like it's approximately another factor of 2 slower in BioConductor 2.5. User time has gone from 25 seconds (2.3) to 150 seconds (2.4) to 290 seconds (2.5). Don't know if this is package-specific or caused by changes in R. Sco ...
transcription go hgu133a gotools written 10.1 years ago by Scott Markel50 • updated 10.1 years ago by Seth Falcon7.4k
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question about ontoCompare() performance change
... I'm seeing a noticeable performance change in goTools' ontoCompare() from BioConductor version 2.3 to 2.4. With the same input data the user time reported by system.time() on my Windows XP machine has gone from 25 seconds to about 150 seconds. Times on a RHEL 5 machine are 30 seconds and 130 secon ...
transcription go hgu133a gotools written 10.5 years ago by Scott Markel50 • updated 10.4 years ago by Jean-Pierre Desvignes60
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Answer: A: Is anyone developing an extensible Galaxy-like interface for Bioconductor?
... Deanne, SciTegic Enterprise Server and Pipeline Pilot offer an extensible client-server data retrieval, filtering, analysis, and reporting platform. Pipeline Pilot comes with many toolkits called collections. The Gene Expression Collection's core functionality is built on top of BioConductor. The ...
written 11.3 years ago by Scott Markel50

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