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0
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1.8k
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Answer:
A: easyRNASeq for miRNA read counts
10.4 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
1.5k
views
Answer:
A: retrieving annotation
10.4 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
2.5k
views
Comment:
C: GTF file error when using easyRNAseq�
10.4 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
2.5k
views
Comment:
C: GTF file error when using easyRNAseq�
10.4 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
2.5k
views
Answer:
A: GTF file error when using easyRNAseq�
10.4 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.6k
views
Comment:
C: EasyRNAseq - error in building count table - Error in unlist
10.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
1.6k
views
Comment:
C: EasyRNAseq - error in building count table - Error in unlist
10.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.3k
views
Answer:
A: eayRNASeq with Ensemble GRCh37 help
10.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
1.6k
views
Answer:
A: EasyRNAseq - error in building count table - Error in unlist
10.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.4k
views
Answer:
A: some problems of easyRNASeq� : about the gtf files
11.0 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
928
views
Comment:
C: startup options
11.0 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.3k
views
RPKM calculation genewise
Normalization
Visualization
easyRNASeq
Normalization
Visualization
easyRNASeq
11.1 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.5k
views
Answer:
A: EasyRNASeq - gff file is not recognized
11.1 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.5k
views
Answer:
A: EasyRNASeq - gff file is not recognized
11.1 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
822
views
easyRNA adapting annotations to avoid overlapping synthetic exons
Annotation
Organism
easyRNASeq
Annotation
Organism
easyRNASeq
11.1 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
853
views
easyRNASeq read counts varying when recounting same sample!
Annotation
GO
biomaRt
easyRNASeq
Annotation
GO
biomaRt
easyRNASeq
11.1 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.4k
views
Answer:
A: Problems in running easyRNASeq
11.2 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
859
views
Comment:
C: Error when splitting an AAStringSet
11.2 years ago
delhomme@embl.de
★ 1.2k
0
votes
3
replies
859
views
Error when splitting an AAStringSet
updated 11.2 years ago by
Valerie Obenchain
★ 6.8k • written 11.2 years ago by
delhomme@embl.de
★ 1.2k
0
votes
1
reply
2.2k
views
Answer:
A: using easyRNASeq to calculate RPKM values
11.2 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
2.1k
views
Comment:
C: vsn preprocess with oligo package
11.2 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.3k
views
Answer:
A: easyRNAseq remove overlapping features
11.2 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.2k
views
Comment:
C: bam file in easyRNASeq
11.3 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
1.2k
views
Answer:
A: bam file in easyRNASeq
11.3 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
2.2k
views
Comment:
C: Getting counts for previously undetected transcripts and genes with easyRNASeq:
11.3 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
2.2k
views
Answer:
A: Getting counts for previously undetected transcripts and genes with easyRNASeq:
11.3 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
2.5k
views
Answer:
A: How to access custom SAM tags (Rsamtools?)
11.3 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
979
views
Answer:
A: easyRNASeq and edgeR
11.4 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.3k
views
get synthetic exon dataset with easyRNASeq
RNASeq
Alignment
Annotation
Normalization
GO
PROcess
GenomicRanges
DEXSeq
easyRNASeq
GO
11.4 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.3k
views
Answer:
A: error in easyRNASeq
11.4 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
834
views
Answer:
A: bam files in sub-directories
11.4 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
834
views
question on easyRNASeq developer version
GLAD
easyRNASeq
GLAD
easyRNASeq
11.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
895
views
get synthetic exon dataset with easyRNASeq
RNASeq
Annotation
Normalization
GO
PROcess
easyRNASeq
RNASeq
Annotation
Normalization
GO
11.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
3.0k
views
Comment:
C: DEseq version and R version compatibility
11.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
843
views
warnings on easyRNASeq package
Annotation
Organism
PROcess
GenomicRanges
easyRNASeq
Annotation
Organism
PROcess
updated 11.5 years ago by
Mun Hua Tan
▴ 10 • written 11.5 years ago by
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.0k
views
Comment:
C: RNAseq object
11.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.3k
views
Comment:
C: question on easyRNASeq developer version
11.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.3k
views
Comment:
C: question on easyRNASeq developer version
11.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
6
replies
1.3k
views
question on easyRNASeq developer version
easyRNASeq
easyRNASeq
updated 11.5 years ago by
RenéBöttcher
▴ 20 • written 11.5 years ago by
delhomme@embl.de
★ 1.2k
0
votes
0
replies
722
views
IRanges: Error in mk_singleBracketReplacementValue(x, value)
Organism
Organism
11.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.3k
views
Comment:
C: Error of GTF Annotation in easyRNASeq
11.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
1.3k
views
Comment:
C: question on easyRNASeq developer version
11.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
1.3k
views
Answer:
A: Error of GTF Annotation in easyRNASeq
11.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
2
replies
1.3k
views
Error of GTF Annotation in easyRNASeq
miRNA
Annotation
easyRNASeq
miRNA
Annotation
easyRNASeq
11.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
1.1k
views
Answer:
A: easyRNASeq package: error when summarizing per gene
11.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
2.5k
views
Answer:
A: counting RNA-seq reads in R/BioC
11.6 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
2.5k
views
Answer:
A: Integer overflow when summing an 'integer' Rle
11.6 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.7k
views
Comment:
C: Where to get BAM files for easyRNASeq human use case
11.6 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
876
views
Answer:
A: Regarding an issue with easyRNASeq - from Surjyendu Ray.
11.6 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
876
views
Regarding an issue with easyRNASeq - from Surjyendu Ray.
Organism
edgeR
easyRNASeq
Organism
edgeR
easyRNASeq
11.6 years ago
delhomme@embl.de
★ 1.2k
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