## User: mattia pelizzola

Reputation:
200
Status:
Trusted
Location:
Last seen:
8 months ago
Joined:
9 years, 7 months ago
Email:
m***************@gmail.com

#### Posts by mattia pelizzola

<prev • 24 results • page 2 of 3 • next >
0
961
views
0
... Hi, several post-doctoral positions are available in the Computational Epigenomics unit at the Center for Genomic Science of IIT@SEMM ( http://genomics.iit.it/groups/computational-epigenomics.html), a new outstation of the Italian Institute of Technology located in the IFOM- IEO Campus in Milan (h ...
written 6.4 years ago by mattia pelizzola200
0
524
views
0
... Computational Biologist position available in Screening Unit in Milan, Italy: http://www.iit.it/en/resources/openings/iit-centres/iitsemm /computational-biologist-semm.html IIT at SEMM is a research outstation of the Fondazione Istituto Italiano di Tecnologia located in Milan at the IFOM-IEO-CAMP ...
written 7.0 years ago by mattia pelizzola200
0
1.0k
views
0
... Dear all,* * enrollment is open for 4 PhD positions in cancer computational biology at the IFOM-IEO campus in Milan, see the ad below. Best, mattia ** *############################# * * * *Cancer computational biology* Four PhD positions in Computational Biology are available at the I ...
written 7.1 years ago by mattia pelizzola200
0
951
views
0
... *Applications are solicited for a PhD program in Computational Biology in Milan, Italy:* * * *Epigenome evolution in tumor models* (*Amati group, IIT & IEO*) Cancer originates from a complex combination of alterations at the level of the genome as well as of the epigenome. We are using next-ge ...
written 7.2 years ago by mattia pelizzola200
3
601
views
3
... Hi, I am using rGADEM and MotIV to find out enriched motifs in my ChIPseq peaks and determine the similarity with Jaspar TFBS. These tools look very useful! rGADEM provides a list of enriched motifs. The total number of motifs is provided by the nOccurrences function, but I can't find a way to get ...
written 7.2 years ago by mattia pelizzola200 • updated 7.2 years ago by Charles Joly Beauparlant160
1
556
views
1
... Hi Martin, I am back on this rtracklayer issue after a while. There is a bug specifically when the package graph is loaded too (before or after rtracklayer). The code (apart from library(graph)) is from the rtracklayer vignette: > library(graph) > library(rtracklayer) Loading required packag ...
written 7.9 years ago by mattia pelizzola200 • updated 7.9 years ago by Michael Lawrence10k
1
478
views
1
... Hi, I am running some code from the rtracklayer vignette. If I start a new R session and I load the rtracklayer only, the code works fine. Unfortunately, I need many other packages at the same time. For some reason when loading all the other packages I get this error: > data(targets) > targe ...
written 8.2 years ago by mattia pelizzola200 • updated 8.2 years ago by Martin Morgan ♦♦ 22k
2
900
views
2
... thanks Martin for the explanations and thanks Norman for pointing out that error in the example, unfortunately I am still stuck with the main problem: I have to use clusterExport to export an object to the cluster nodes. clusterExport only seems to export objects from the GlobalEnv, unfortunately. ...
written 8.5 years ago by mattia pelizzola200
2
900
views
2
... Hi, I have a simple function: > library(snow) > fun2=function() { + cl=makeCluster(3) + Mat=matrix(2:10,3,3) + fun3=function(startInd, endInd=3, data=Mat) {Mat[startInd:endInd,]} + print(clusterApplyLB(cl, 1:3, fun3)) + stopCluster(cl) + } that is working fine: > fun2() [[1]] [,1] ...
written 8.5 years ago by mattia pelizzola200 • updated 8.5 years ago by Pavelka, Norman70
1
446
views
1
... Hi, I am trying to get some autocorrelation analysis based on positions of DNA words. Given a certain DNA motif or word, you can have its positions on the genome. I am trying to figure out if there is any regularity (pattern) in that. What I did is to determine pair-wise distances and see how many ...
written 9.4 years ago by mattia pelizzola200 • updated 9.4 years ago by Zeljko Debeljak50

#### Latest awards to mattia pelizzola

Scholar 3.9 years ago, created an answer that has been accepted. For A: Problem with using GRheatmapData function in compEpiTools package

Content
Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.