User: David Garfield

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Last seen:
10 years ago
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10 years, 8 months ago
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d****@duke.edu

Posts by David Garfield

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Harshlight (or similar) for Agilent arrays
... Hey folks, I'm hoping that someone out there might be able to point my in the right direction for pre-existing packages/methods for applying corrections (like harshlight) to Agilent arrays. I have an array in my dataset with some pretty clear spatial artifacts that I'd like to mask out. However, ha ...
harshlight written 10.1 years ago by David Garfield30
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Microarray normalization in the face of many differentially expressed genes
... Hi all, I'm picking up on an older thread (https://stat.ethz.ch/pipermail/bioconductor/2006-August/013881.html ) which poses the following question: What are the most appropriate methods for normalization in the face of large numbers of differentially expressed genes? Aside from this 2006 thr ...
normalization limma written 10.4 years ago by David Garfield30
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Three questions about processing Agilent Arrays
... Hi all, I am new to micro-array processing and to Bioconductor. The documentation provided by the authors of packages like limma and marray have made it very easy to get a toehold on how to pre-process, normalize, and analyze microarrays. The Agilent Feature Extraction Software Manuals, alas, ...
normalization limma process written 10.7 years ago by David Garfield30

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