User: Oscar Rueda

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Oscar Rueda40
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Last seen:
7 years, 8 months ago
Joined:
10 years, 6 months ago
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o**********@cancer.org.uk

Posts by Oscar Rueda

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Caught segfault when running MEDIPS package
... Hi Asta, I've had a similar error in the past; It was caused by chromosome names in the roi file not found in your data file. I would check that. Cheers, Oscar Oscar M. Rueda, PhD. Postdoctoral Research Fellow, Breast Cancer Functional Genomics. Cancer Research UK Cambridge Research Institute. L ...
written 7.7 years ago by Oscar Rueda40
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Answer: A: Limma factorial experiment: interaction parameter
... Dear Donald, Yes, the contrast to test the interaction effect should be DH-DC-CH+CC ((combo-control)-(x-control)-(y-control)). If you don't get significant probes it means that the effect of the combination of the two drugs is the sum of the marginal effects; that could make sense depending on the ...
written 8.5 years ago by Oscar Rueda40
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Discrepancies finding genes with a given GO term
... Dear list, I'm trying to find the list of genes with a given go term. I'm using two different methods and I get different results for amigo web page. If I use: > library(GO.db) > library(org.Hs.eg.db) > res <- get("GO:0006913", revmap(org.Hs.egGO)) > res <- do.call('c', mget(res, ...
go cancer breast biomart written 8.5 years ago by Oscar Rueda40
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Warning in mergeLevels
... Dear list, When running the mergeLevels() function from aCGH package with a long array (for example:) library(DNAcopy) library(aCGH) log2ratios <- rnorm(1440000) Chrom <- rep(1:24, rep(60000, 24)) Pos <- rep(1:60000, 24) CN <- CNA(genomdat=as.matrix(log2ratios, ncol=1), chrom=Chrom, ma ...
acgh cancer written 10.5 years ago by Oscar Rueda40

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