User: Alberto Goldoni

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Posts by Alberto Goldoni

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help on reading Agilent 44k 2 colour
... Dear all, i'm newbie in reading agilent 44k arrays. this is my targets file: "SlideNumber" "FileNameCy3" "FileNameCy5" "Cy3" "Cy5" 1 "prova01.txt" "prova02.txt" "WT" "Mutant" 2 "prova03.txt" "prova04.txt" "WT" "Mutant" 3 "prova05.txt" "prova06.txt" "WT" ...
genetics limma written 9.3 years ago by Alberto Goldoni60 • updated 9.3 years ago by Yong Li190
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Answer: A: AgiMicroRna package is not available at bioconductor or not in active form???
... Dear all, i'm newbie in reading agilent 44k arrays. this is my targets file: "SlideNumber" "FileNameCy3" "FileNameCy5" "Cy3" "Cy5" 1 "prova01.txt" "prova02.txt" "WT" "Mutant" 2 "prova03.txt" "prova04.txt" "WT" "Mutant" 3 "prova05.txt" "prova06.txt" "WT" ...
written 9.3 years ago by Alberto Goldoni60
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problem with qPCR raw data
... Dear all, there is a method to calculate the Ct value if i have the file.txt with the fuolescence intensity like this one: Raw Data Experiment - PIASTRA 1 ALL+CML (Run on LCS480 1.2.9.11) SamplePos SampleName Prog# Seg# Cycle# Time Temp 483-533 A1 4200_ABL ...
genetics written 9.5 years ago by Alberto Goldoni60 • updated 9.5 years ago by Heidi Dvinge2.0k
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problem with the structure of a list of pathways
... Dear all, i have a problem with the package annaffy. As the vignette says i can save an HTML page (example1.html): anncols <- aaf.handler()[c(1:3, 8:9, 11:13)] anntable <- aafTableAnn(probeids[1:50], "hgu95av2.db", anncols) saveHTML(anntable, "example1.html", title = "Example Table without D ...
genetics pathways probe annaffy written 10.1 years ago by Alberto Goldoni60 • updated 10.1 years ago by James W. MacDonald50k
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Comment: C: Script for filtering
... Sorry i'll be more detailed. in R i'd need to load the file GenomeWideSNP_6.0 containing all the SNPs and in the second time i compare this list with a second list containing SNPs of 500 genes. I would like to know how many genes (of the second list: 500) are included in the first list (GenomeWide ...
written 10.2 years ago by Alberto Goldoni60
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Script for filtering
... Hi to everybody, i have to extract 500 genes from all the genes present on the GenomeWideSNP_6.0 database. If i have the list of these 500 genes, are there a script in order to extract only these genes from the complete list? Thanks a lot. ...
written 10.2 years ago by Alberto Goldoni60 • updated 10.2 years ago by James W. MacDonald50k

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