User: Julien Meunier

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9 years, 10 months ago
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10 years ago
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Posts by Julien Meunier

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available gene sets for mouse 430.2
... Hi, I would like to perform a GSEA analysis with bioconductor (mouse 430.2 arrays). I am looking for predefined gene sets (GO term; pathway, TFBS, positionnal, and others) related to the mouse that are well defined and documented (that is, curated, up to date, and with some information on the ...
written 9.9 years ago by Julien Meunier30
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Comment: C: KEGGSOAP: problem with get.pathways.by.genes()
... Hi Saroj, Thank you for your reply. Yet, I am still puzzled by the behavior of get.pathway.by.genes() in KEGGSOAP: I have been running this session: > sessionInfo() R version 2.9.0 (2009-04-17) i386-apple-darwin8.11.1 locale: C attached base packages: [1] stats graphics grDevices ut ...
written 10.0 years ago by Julien Meunier30
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KEGGSOAP: problem with get.pathways.by.genes()
... Hi everyone, I am trying to convert entrez id (mouse) to KEGG pathway using the keggsoap package, and having a hard time. get.genes.by.pathway(c("path:mmu04060")) would give me the following result: [1] "mmu:100044793" "mmu:100047704" "mmu:110542" "mmu:11477" "mmu:11479" ... However, th ...
pathways convert keggsoap written 10.0 years ago by Julien Meunier30 • updated 10.0 years ago by Saroj K Mohapatra400

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