User: Mohamed Lajnef

gravatar for Mohamed Lajnef
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Posts by Mohamed Lajnef

<prev • 25 results • page 1 of 3 • next >
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Gene description
... Dear All, I'm looking to make a summary of the functionality of a gene (ID,name,position,Ch,function,pathways). could you please give me some useful informations (packages) to do this summary ? Any help would be appreciated Regrads -- #################################### Mohamed Lajnef,IE INSERM ...
written 8.6 years ago by Mohamed Lajnef250 • updated 8.6 years ago by James W. MacDonald51k
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Quantile normalization in Ringo package
... Dear all I'd like to use quantile ( not Rquantile or Gquantile) normalization in preprocess function in Ringo package, it's possible to do that ? Any help would be appreciated Regards M -- #################################### Mohamed Lajnef,IE INSERM U955 eq 15# Pôle de Psychiatrie ...
ringo written 9.2 years ago by Mohamed Lajnef250 • updated 9.1 years ago by Joern Toedling450
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Agilent CpG islands-Limma
... Dear R users, I try to use Limma package to analyze methylation databases generated from Agilent CpG Islanfds, but i dont know if this is relevant because i have 4 groups ( one replicate for each group) ?? Can you please suggest me a method to analyze my data ? Any help will be appreciated Rega ...
limma written 9.4 years ago by Mohamed Lajnef250 • updated 9.4 years ago by Prashantha Hebbar260
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Extract a subset of an MAList object
... Dear R users, How can I extract a subset of an MAlist object ? Thank you in advance M -- Mohamed Lajnef,IE INSERM U955 eq 15 P?le de Psychiatrie H?pital CHENEVIER 40, rue Mesly 94010 CRETEIL Cedex FRANCE Mohamed.lajnef at inserm.fr tel : 01 49 81 31 31 (poste 18470) Sec : 01 49 81 32 90 fax : ...
written 9.6 years ago by Mohamed Lajnef250 • updated 9.6 years ago by Sean Davis21k
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Comment: C: Methylation data
... Prashantha, Thank you very much, MeDIP protocol is used for our project! Regards Prashantha Hebbar a ?crit : > Hi Mohamed, > > Bioconductor packages are available but depends on the type of > experimental protocol followed. If you have followed DMH method, you > can use limma, If ...
written 9.6 years ago by Mohamed Lajnef250
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Methylation data
... Dear All, I 'am looking for a package in R to analyse methylation databases generated from Agilent CpG Islanfds. Any help will be appreciated Regards Mohamed ...
written 9.6 years ago by Mohamed Lajnef250 • updated 9.6 years ago by Prashantha Hebbar260
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Empirical pvalue
... Dear R users, Can someone explain me the interpretation of empirical p-value ( max(t)) used to test the genetic association with PLINK? Any help will be appreciated Regards M -- Mohamed Lajnef,IE INSERM U955 eq 15 P?le de Psychiatrie H?pital CHENEVIER 40, rue Mesly 94010 CRETEIL Cedex FRANCE ...
written 9.8 years ago by Mohamed Lajnef250
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Empirical Pvalue
... Dear R users, Can someone explain me the interpretation of empirical p-value ( max(t)) used to test the genetic association with PLINK? Any help will be appreciated Regards M -- Mohamed Lajnef,IE INSERM U955 eq 15 P?le de Psychiatrie H?pital CHENEVIER 40, rue Mesly 94010 CRETEIL Cedex FRANC ...
written 9.8 years ago by Mohamed Lajnef250 • updated 9.7 years ago by Hervé Pagès ♦♦ 14k
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Comment: C: Snp matching
... Dear Martin & Hans, gene not gene1 sorry for the mistake! yes i am sure about this gene (http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=sam) , thank you again for your help M Martin Morgan a ?crit : > Hotz, Hans-Rudolf wrote: >> Hi Mohamed >> >> ...
written 10.1 years ago by Mohamed Lajnef250
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Comment: C: Snp matching
... Hi Rhoda, thank you for your answer! it works, but among my list of genes i can not find the gene SAM(sam-adenosylmethionine transporter) when i used org.Hs.egALIAS2EG mappings . library(org.Hs.eg.db) library("SNPlocs.Hsapiens.dbSNP.20080617") gene<-c("PPP3CC","DNMT1","SMS","SAM","MTHFR") ...
written 10.1 years ago by Mohamed Lajnef250

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Popular Question 8.6 years ago, created a question with more than 1,000 views. For Differential expression ( Limma) for illumina microarrays?

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