User: Md.Mamunur Rashid

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Posts by Md.Mamunur Rashid

<prev • 26 results • page 2 of 3 • next >
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Fitting arrayweights in linear model
... Dear Wei, Sorry for replying late. I was on vacation and went back to home. thanks for your suggestion. I have tried reading some previous mails from bioc forum to find a way to add batch factor in the linear model. But did not clearly understand how to do that. In my linear model I am comparing t ...
normalization go written 9.5 years ago by Md.Mamunur Rashid260 • updated 9.5 years ago by Wei Shi3.0k
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[Fwd: Problem installing RMAGEML]
... hi all, please ignore my last post. I have found it out. Rookie mistake. just updated the R configuration with $ R CMD javareconf Thnaks anyway. regards, Mamun -------- Original Message -------- Subject: Problem installing RMAGEML Date: Tue, 29 Sep 2009 16:38:46 +0100 From: Md.Mamun ...
rmageml written 9.6 years ago by Md.Mamunur Rashid260
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Problem installing RMAGEML
... Dear Bioc members, I ran in to a problem while trying to install RMAGEML package. /usr/bin/ld: cannot find -ljava . (please look at the bottom for details of the error) I have set the following in ~/.bashrc file. export JAVA_HOME=/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64 export LD_LIBRARY_ ...
rmageml written 9.6 years ago by Md.Mamunur Rashid260
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Fitting arrayweights in linear model
... Dear Wei, Thanks for your reply. I know it's a long email, but I tried to give details about the raw data Please have a look when you have some spare time. 1. About the raw data : ----------------------- Yes this arrays are from the same bead chip. The experiments were done by three individuals ( ...
normalization beadarray written 9.6 years ago by Md.Mamunur Rashid260 • updated 9.6 years ago by Wei Shi3.0k
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Answer: A: Creating LumiBatch object from ExpressionSet
... Dear Dr. Pan Du, Thanks for the help. I will look forward for the upgraded package. regards, Mamun On 09/09/2009 02:42 PM, Pan Du wrote: > Hi Md.Mamunur > > Thanks for reporting the problem. It does have problems of importing > detection and beadNum information due to the changes of ...
written 9.6 years ago by Md.Mamunur Rashid260
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[Fwd: problem : Detection-p.value column in Illumina HumanHT12 data]
... -------- Original Message -------- Subject: Re: Creating LumiBatch object from ExpressionSet Date: Wed, 9 Sep 2009 13:53:42 +0100 From: Md.Mamunur Rashid To: Pan Du , "bioconductor at stat.math.ethz.ch" Dear Dr. Pan Du, Thanks for your reply.I am looking at the gene filter pack ...
microarray probe genefilter limma lumi written 9.6 years ago by Md.Mamunur Rashid260
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[Fwd: result of linear model]
... ## Experiment with illumina microArrays 96 samples. There are 3 groups (X,Y,Z) each group has 96 samples ## Loading all the required libraris library(lumi) library(limma) library(mgcv) library(lumiHumanAll.db) library(lumiHumanIDMapping) library(GOstats) library(annotate) lib ...
written 9.6 years ago by Md.Mamunur Rashid260 • updated 9.6 years ago by Naomi Altman6.0k
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result of linear model
... Dear Gordon, I am working with a set of illumina microarray data (96 samples) from three groups (i.e. group-1(X),group-2(Y),group-3(Z)). 32 samples from each group. I have read the data using lumiR method and processed the data using lumi Methods(lumiExpresso). Now I need to identify the differen ...
microarray limma written 9.6 years ago by Md.Mamunur Rashid260 • updated 9.6 years ago by Gordon Smyth37k
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limma for identifying differentially expressed genes from illumina data
... Dear All, I am working with a set of illumina microarray data (96 samples) from three groups (i.e. group-1(X) group-2 (Y), group-3(Z)). I have read the data using lumiR methoda and normalized the data using lumi Methods. Now I need to identify the differentially expressed genes by comparing each ...
microarray limma lumi written 9.7 years ago by Md.Mamunur Rashid260 • updated 9.7 years ago by Wei Shi3.0k
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linear model for illumina Data(identifying differentially expressed genes)
... Dear All, first I would like to apologize for a long mail. I am working with probe profile file(tab separated file) generated by illumina beadstudio software. Main objective is to identify differentially expressed genes. the experiment is done using single channel illumina microarray data. There a ...
microarray probe limma written 9.7 years ago by Md.Mamunur Rashid260

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