User: Bogdan

gravatar for Bogdan
Bogdan50
Reputation:
50
Status:
New User
Location:
Last seen:
9 years, 1 month ago
Joined:
10 years, 2 months ago
Email:
b************@imbg.org.ua

Posts by Bogdan

<prev • 5 results • page 1 of 1 • next >
0
votes
3
answers
537
views
3
answers
Answer: A: gene2pathway retrain: which model is more complete?
... Replying to the last one of my own questions: > Of all the retrain()-generated models I now have, which one is > theoretically better to use? > The one with the most genes, most level detectors, or most features (domains)? > Or the one with the lowest average prediction error, disregard ...
written 9.2 years ago by Bogdan50
0
votes
3
answers
537
views
3
answers
Answer: A: gene2pathway retrain: which model is more complete?
... I believe there is a plausible explanation for Question 1: quite a number of software packages have different versions at home and on the server, *including* gene2pathway - which is 1.6.0 on server and 1.6.1 at home. Previously, I erroneously believed gene2pathway versions were the same. Now only Q ...
written 9.2 years ago by Bogdan50
0
votes
3
answers
537
views
3
answers
gene2pathway retrain: which model is more complete?
... After converting my custom gene2Domains mapping into a list of vectors > head(entrez2interpro_nested) $`679594` [1] "IPR019956" "IPR019954" "IPR019955" "IPR000626" $`682397` [1] "IPR019956" "IPR019954" and feeding that into retrain(), I now have the 4th model (most complete?), built using gen ...
genetics coverage biomart gene2pathway written 9.2 years ago by Bogdan50
0
votes
3
answers
537
views
3
answers
Answer: A: gene2pathway retrain: which model is more complete?
... Dear all, I have 2 PCs: server running Debian Lenny and R 2.7.1, and home running Debian Testing and R 2.11.1. Both have gene2pathway 1.6.1 (and dependencies) installed. When running `model.rno = retrain(organism = "rno")`, I got slightly different outputs describing the components to build the mo ...
written 9.2 years ago by Bogdan50
0
votes
2
answers
932
views
2
answers
[resolved] xps compilation error on Debian squeeze/testing
... Hi, after the installation of BioConductor, running > biocLite("xps") produces compilation error (see full log at the end of email): g++ -O2 -Wall -fPIC -pthread -m32 -I/usr/include/root -c XPSUtils.cxx XPSUtils.cxx: In function ?void READ_WSTRING(std::ifstream&, char*&, Bool_t)?: XPS ...
xps written 10.2 years ago by Bogdan50 • updated 10.2 years ago by cstrato3.9k

Latest awards to Bogdan

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 264 users visited in the last hour