User: adoty@umd.edu

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Posts by adoty@umd.edu

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Answer: A: getting normexp (and log2 transformed) values - not further-processed M values
... Dear Dr. Smyth, Thanks so much for your quick and helpful reply. Yes, I think you are right to say "just use R!" I never had before I began to analyze my RIP-CHiP data set (hence the non-standard use of limmaGUI) - but I have indeed thoroughly read the limma user's manual (and I also tried gener ...
written 9.0 years ago by adoty@umd.edu30
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Answer: A: getting normexp (and log2 transformed) values - not further-processed M values
... Dear Scott et al. Thank you very much for the information. After reading both the limma.pdf and the usersguide.pdf (and playing around with my Windows R console), I now know that by typing "fix(RG)" in limmaGUI's "Evaluate R Code" tab, I can get the RG object to display itself in some form... I ...
written 9.0 years ago by adoty@umd.edu30
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getting normexp (and log2 transformed) values - not further-processed M values
... Dear Listserv, I have an unusual microarray data set -a RIP-ChIP data set- and would like to use the "normexp" function (as found in limma) to background- subtract my data (and I'll take it's log2 data transformation, too) - but I don't want the automatic M and A value output that you can get from ...
microarray limma limmagui written 9.0 years ago by adoty@umd.edu30

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