User: L L

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L L30
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7 years, 8 months ago
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8 years, 1 month ago
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Posts by L L

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Comment: C: affyPara: background correction & normalization only?
... Dear Markus, Thanks for a quick reply. I tested affyPara 1.7.1. To get the summarization method 'none' to work, I had to slightly modify the summary.method check in preproPara R code ("if ((any( express.summary.stat.methods()==summary.method) || summary.method == "none") == 0) stop("Unknown Summa ...
written 7.7 years ago by L L30
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affyPara: background correction & normalization only?
... Dear affyPara package maintainers and BioC developer community, The parallelizations of Affy preprocessing in the affyPara package provide essential tools to handle large array collections. Before starting to hack on this myself, I would like to ask if there are workarounds in affyPara to obtain ...
preprocessing affy affypara written 7.7 years ago by L L30 • updated 7.7 years ago by Markus Schmidberger380
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Differential expression on individual Affy probes (Peter Saffrey)
... Dear Peter, "RPA" package implements a probabilistic method for probe-level differential gene expression analysis on Affymetrix arrays, and is in review for the next BioC release (see http://www.bioconductor.org/packages/2.5/bioc/html/RPA.html). The package also provides tools to analyze the reliab ...
probe affy written 8.1 years ago by L L30

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