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4.2k
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biomaRt connection problems
biomaRt biomaRt
updated 13.8 years ago by 21k • written 13.8 years ago by ★ 3.4k
0
votes
13
replies
3.3k
views
DESeq and number of replicates required for RNA-Seq
GO DESeq GO DESeq
updated 13.8 years ago by ★ 6.0k • written 13.9 years ago by ★ 3.4k
0
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8
replies
2.0k
views
Experimental design for RNA-Seq
edgeR DEGseq DESeq edgeR DEGseq DESeq
updated 13.9 years ago by ★ 6.0k • written 13.9 years ago by ★ 3.4k
0
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0
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1.2k
views
GEOquery: invalid class "ExpressionSet" object: featureNames differ between assayData and featureData
14.0 years ago michael watson IAH-C ★ 3.4k
0
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0
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936
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Comparing gene set enrichment lists / GO terms
Microarray GO PROcess Microarray GO PROcess
14.2 years ago michael watson IAH-C ★ 3.4k
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0
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695
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Bioinformatics position at the Institute for Animal Health, UK
14.5 years ago michael watson IAH-C ★ 3.4k
0
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2
replies
2.1k
views
hclust to newick format?
convert convert
updated 14.5 years ago by ▴ 10 • written 14.5 years ago by ★ 3.4k
0
votes
10
replies
1.9k
views
Statistics for next-generation sequencing transcriptomics
Sequencing SAGE Sequencing SAGE
updated 14.7 years ago by ▴ 10 • written 14.7 years ago by ★ 3.4k
0
votes
3
replies
1.3k
views
Problems with biomaRt
biomaRt biomaRt
updated 14.8 years ago by ▴ 810 • written 14.8 years ago by ★ 3.4k
0
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0
replies
445
views
Info about GO package
GO GO
14.8 years ago michael watson IAH-C ★ 3.4k
0
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0
replies
1.0k
views
R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
14.8 years ago michael watson IAH-C ★ 3.4k
0
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0
replies
1.7k
views
how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
14.8 years ago michael watson IAH-C ★ 3.4k
0
votes
0
replies
885
views
Visulising KEGG pathways using KEGGSOAP - example code
Pathways geneplotter KEGGSOAP biomaRt GEOquery Pathways geneplotter KEGGSOAP biomaRt
15.0 years ago michael watson IAH-C ★ 3.4k
0
votes
0
replies
672
views
Keep getting warning messages of package 'XYZ' was builtunder R version 2.8.1
15.2 years ago michael watson IAH-C ★ 3.4k
0
votes
0
replies
619
views
Code for reading Oxford Gene Technology (OGT) arrays using limma
Annotation limma Annotation limma
15.4 years ago michael watson IAH-C ★ 3.4k
0
votes
0
replies
1.2k
views
Changing fontsize in Rgraphviz
Rgraphviz Rgraphviz
15.6 years ago michael watson IAH-C ★ 3.4k
0
votes
1
reply
917
views
Ensembl IDs 2 GO term enrichment --> simple solution withoutbiomart? ( I can't install it because of RCurl)
GO GOstats biomaRt GO GOstats biomaRt
15.6 years ago michael watson IAH-C ★ 3.4k
0
votes
3
replies
1.1k
views
GEOQuery - from a LOCAL SOFT file to an ExprSet object
convert GEOquery convert GEOquery
updated 15.6 years ago by 21k • written 15.6 years ago by ★ 3.4k
0
votes
0
replies
1.5k
views
topGO and font size in the graph plots
graph Rgraphviz topGO graph Rgraphviz topGO
15.6 years ago michael watson IAH-C ★ 3.4k
0
votes
1
reply
587
views
Rgraphviz issues
updated 15.6 years ago by 6.7k • written 15.6 years ago by ★ 3.4k
0
votes
1
reply
580
views
Problems installing AnnotationDbi on RHEL4 using biocLite
updated 15.7 years ago by ★ 7.2k • written 15.7 years ago by ★ 3.4k
0
votes
4
replies
1.4k
views
Limma - error reading in .gpr files
limma limma
updated 16.4 years ago by ▴ 180 • written 16.4 years ago by ★ 3.4k
0
votes
1
reply
533
views
One directional spatial normalisation for microarray data
marray marray
updated 16.4 years ago by ★ 2.4k • written 16.4 years ago by ★ 3.4k
0
votes
0
replies
711
views
normalization of a microarray like dataframe and removingmissing data by % missing
Microarray Normalization convert Microarray Normalization convert
17.2 years ago michael watson IAH-C ★ 3.4k
0
votes
7
replies
1.1k
views
Ensuring two graphs have the same layout in Rgraphviz
updated 17.2 years ago by ▴ 570 • written 17.2 years ago by ★ 3.4k
0
votes
1
reply
6.0k
views
Unable to use biomaRt because Rcurl doesn't pick up my proxy server address
biomaRt biomaRt
updated 17.8 years ago by ▴ 110 • written 17.8 years ago by ★ 3.4k
0
votes
2
replies
1.8k
views
biomaRt error: useMart fails
biomaRt biomaRt
updated 17.8 years ago by ▴ 580 • written 17.8 years ago by ★ 3.4k
0
votes
1
reply
660
views
biomaRt error and no devel package for windows?
updated 17.9 years ago by 65k • written 17.9 years ago by ★ 3.4k
0
votes
0
replies
554
views
Limma, dye-swaps and uneven numbers of replicate arrays
17.9 years ago michael watson IAH-C ★ 3.4k
0
votes
0
replies
673
views
Inconsistent results returned from KEGG
KEGGSOAP KEGGSOAP
18.1 years ago michael watson IAH-C ★ 3.4k
0
votes
1
reply
483
views
Conversion of affymetrix annotation environment to matrix
GO affy convert GO affy convert
updated 18.1 years ago by ★ 13k • written 18.1 years ago by ★ 3.4k
0
votes
5
replies
1.2k
views
M vs A plots of affymetrix data
probe probe
18.1 years ago michael watson IAH-C ★ 3.4k
0
votes
3
replies
1.0k
views
Design matrix for simple time course
18.1 years ago michael watson IAH-C ★ 3.4k
0
votes
7
replies
1.8k
views
Limma and time-course data
limma limma
updated 18.1 years ago by 50k • written 18.1 years ago by ★ 3.4k
0
votes
12
replies
2.0k
views
Quick start to linking GO terms and microarray data
Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats
18.1 years ago michael watson IAH-C ★ 3.4k
0
votes
3
replies
770
views
Limma and time-course data
18.1 years ago michael watson IAH-C ★ 3.4k
0
votes
2
replies
832
views
Explaining limma, design matrices and linear models to non statisticians
limma limma
updated 18.2 years ago by ▴ 70 • written 18.2 years ago by ★ 3.4k
0
votes
0
replies
585
views
Limma: can't use plotPrintTipLoess() with split.screen()
limma limma
18.2 years ago michael watson IAH-C ★ 3.4k
0
votes
1
reply
553
views
Calculating the average differential exprression
Microarray Microarray
updated 18.2 years ago by 65k • written 18.2 years ago by ★ 3.4k
0
votes
0
replies
652
views
Limma and creating design matrices for complex loop designs
limma limma
18.4 years ago michael watson IAH-C ★ 3.4k
0
votes
1
reply
585
views
Limma and creating design matrices for complex loop designs
limma limma
updated 18.4 years ago by 50k • written 18.4 years ago by ★ 3.4k
0
votes
0
replies
273
views
Limma: Calculating the interaction term in a 3x2 factorial design with two colour microarrays!
18.4 years ago michael watson IAH-C ★ 3.4k
0
votes
1
reply
1.0k
views
problem reading GenePix files with .XLS extension
updated 18.6 years ago by ▴ 600 • written 18.6 years ago by ★ 3.4k
0
votes
2
replies
657
views
Normalisation knocks my "housekeeping genes" off!
18.6 years ago michael watson IAH-C ★ 3.4k
0
votes
0
replies
598
views
Dealing with technical replication with a common reference design
Microarray GO limma Microarray GO limma
18.6 years ago michael watson IAH-C ★ 3.4k
0
votes
0
replies
762
views
Dealing with technical replication with a common reference design
Microarray GO limma Microarray GO limma
18.6 years ago michael watson IAH-C ★ 3.4k
0
votes
0
replies
744
views
spotSegmentation
spotSegmentation spotSegmentation
18.8 years ago michael watson IAH-C ★ 3.4k
0
votes
1
reply
876
views
Building R packages
updated 18.8 years ago by 65k • written 18.8 years ago by ★ 3.4k
0
votes
0
replies
1.0k
views
R package for visualising quantitative data on bacterial genomes
Microarray Microarray
19.0 years ago michael watson IAH-C ★ 3.4k
0
votes
2
replies
867
views
greenred.colors() in geneplotter
geneplotter geneplotter
19.2 years ago michael watson IAH-C ★ 3.4k
120 results • Page 1 of 3
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