User: Beth Wilmot

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Beth Wilmot120
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Posts by Beth Wilmot

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Comment: C: ParseMetaFromGtfFile is.na() error
... My code is: ParseMetaFromGtfFile("mm10/Mus_musculus.GRCm38.73.gtf",fastaFilePatter n="mm10/Mus_musculus.GRCm38.73.fa",outFilePath="mm10/GRCh38_Annotation .txt",featureTypes=c("protein_coding"),attributeType="gene_id") Thanks, Beth From: Michael Lawrence [mailto:lawrence.michael@gene.com] Sent: Thu ...
written 3.5 years ago by Beth Wilmot120
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Answer: A: BufferedMatrixMethods error
... Herve, Thank you very much. It works perfectly. Beth >>> "Herve Pages" 6/28/2007 2:18:38 PM >>> Hi Beth, Note that the issue that you are reporting now is different from what you reported earlier. It seems that you managed to solve your initial problem: "init_package.c", ...
written 10.4 years ago by Beth Wilmot120
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Answer: A: BufferedMatrixMethods error
... Herve, thank you For your response. I am installing these packages in my own directory. I did install BufferedMatrix first and the doubleBufferedMatrix_stubs.c file is located in the BufferedMatrix/include directory. I have tried to install the package both through GetBioC and through R CMD INST ...
written 10.4 years ago by Beth Wilmot120
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BufferedMatrixMethods error
... Hello, I am running R-2.5.0 ons a 64bit Solaris 10. I am trying to install BufferedMatrixMethods and got the following error: "init_package.c", line 5: cannot find include file: "doubleBufferedMatrix_stubs.c" cc: acomp failed for init_package.c I was able to successfully install this package on ...
bufferedmatrixmethods written 10.4 years ago by Beth Wilmot120
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memory error on unix
... Hello, I am running R-2.5.0 and Bioconductor 2.0 and oligo 1.0.2-3 on a Sun OS 5.10 Generic_118855-19 i86pc i386 i86pc and Solaris 10 6/06 s10x_u2wos_09a X86. I have seen the help messages concerning memory errors but cannot find a solution to unix memory errors. I thought R would be using all a ...
oligo written 10.5 years ago by Beth Wilmot120 • updated 10.4 years ago by Brandon Higgs30
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crlmm error: cluster centres
... Hello, I am running R-2.5; Bioconductor 2.0 and oligo 1.0.2-3. I have created a SNPQset but am unable to get the genotypes from crlmm: > hindcrlmm = crlmm(hindDataRMA,correctionFile ="correctionHind.rda") M correction not provided. Calculating. Will take several minutes. Error: number of clust ...
oligo written 10.5 years ago by Beth Wilmot120 • updated 10.5 years ago by Benilton Carvalho4.2k
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Answer: A: Fwd: pmStrand() in oligo (version...)
... Hello, I am having the same difficulty with both nsp and sty pkgs. I re-installed the pd. mapping pkgs from bioconductor and still have only the two: [1] "pd.mapping250k.nsp.sqlite" "seqMat.rda" Thanks, Beth >>> "Benilton Carvalho" 6/5/2007 6:23:10 AM >>> Begin forwarded me ...
written 10.5 years ago by Beth Wilmot120
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chromLocation
... An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20060106/ 69d90a0e/attachment.pl ...
written 11.9 years ago by Beth Wilmot120 • updated 11.9 years ago by Furge, Kyle210
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subsetting exprsSet
... R1.9.1 Windows 2000 Hello, I have a normalized Expression Set with 2 variables (sample and status). Expression Set (exprSet) with 54675 genes 17 samples phenoData object with 2 variables and 17 cases varLabels sample: arbitrary numbering ...
biobase written 13.0 years ago by Beth Wilmot120
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Answer: A: mva.pairs parameters
... Works great. Thank you very much. Beth >>> "James W. MacDonald" 12/02 9:10 AM >>> Beth Wilmot wrote: > Hello, > > I am using R1.9.1 on Windows 2000. > > I have been able to change the main title using main="title" but have > been unable to change any of the ot ...
written 13.0 years ago by Beth Wilmot120

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