User: Sara JC Gosline

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9 years, 11 months ago
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9 years, 11 months ago
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Posts by Sara JC Gosline

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Comment: C: RpsiXML issues with latest Biogrid release files
... Hi Tony, Thanks, I updated my R version and bioconductor and was still able to reproduce the error on a different machine. I sent the .xml file to David to reproduce. Here is my new sessionInfo(): R version 2.10.0 (2009-10-26) i386-apple-darwin9.8.0 locale: [1] en_CA.UTF-8/en_CA.UTF-8/C/C/en_CA ...
written 10.0 years ago by Sara JC Gosline60
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RpsiXML issues with latest Biogrid release files
... Hello again, I have recently installed and used RpsiXML to successfully parse the latest xml files from intact. However, when I try the same functions with the latest version of Biogrid (to obtain assay-specific interactions instead of experiment-specific), I get a graph with a single node ?NA? and ...
go organism arabidopsis thaliana graph rpsixml written 10.0 years ago by Sara JC Gosline60 • updated 10.0 years ago by Jitao David Zhang340
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Answer: A: problems getting new intact networks from ppiData
... Please ignore this email, this issue was already resolved. sorry, sara Sara JC Gosline wrote: > Hello, > > I'm trying to use the ppiData package and am having trouble getting > newer datasets from intact. > > >library(ppiData) > >collectIntactPPIData("EBI-2007879") > ...
written 10.0 years ago by Sara JC Gosline60
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Answer: A: problems getting new intact networks from ppiData
... Hello, I'm trying to use the ppiData package and am having trouble getting newer datasets from intact. >library(ppiData) >collectIntactPPIData("EBI-2007879") Error in b2pList[[i]][[j]] : subscript out of bounds My sessionInfo() is at the end of this email. It appears that this later data ...
written 10.0 years ago by Sara JC Gosline60
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Comment: C: problems getting new intact networks from ppiData
... Hi Tony, Thanks for your prompt response. This package was exactly what I needed, though after trying out the package for a day I have another question. The function translateID refers to another function translateID- methods to describe the precise capabilities, but when I type ?translateID-meth ...
written 10.0 years ago by Sara JC Gosline60
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problems getting new intact networks from ppiData
... Hello, I'm trying to use the ppiData package and am having trouble getting newer datasets from intact. >library(ppiData) >collectIntactPPIData("EBI-2007879") Error in b2pList[[i]][[j]] : subscript out of bounds My sessionInfo() is at the end of this email. It appears that this later data ...
written 10.0 years ago by Sara JC Gosline60

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