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Comment: C: dealing with BATCH effect/ donor variation in RNA seq data
3.7 years ago Simon Anders ★ 3.7k
0
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0
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1.3k
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Comment: C: Wrong results of DESeq compared to DESeq2 for some test cases?
4.1 years ago Simon Anders ★ 3.7k
0
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0
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1.1k
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Comment: C: how to analyze and find differentially expressed genes based on miRNA gene raw
4.2 years ago Simon Anders ★ 3.7k
0
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0
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1.7k
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Comment: C: Paired samples in cell lines using DESeq2
4.8 years ago Simon Anders ★ 3.7k
0
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2
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964
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Comment: C: Genes that have NOT changed
5.3 years ago Simon Anders ★ 3.7k
0
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0
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843
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Comment: C: p-values smaller than machine epsilon in DESeq2
5.5 years ago Simon Anders ★ 3.7k
0
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1
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2.7k
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Comment: C: DESeq2 Time Series and "control" condition
updated 5.5 years ago by 41k • written 5.5 years ago by ★ 3.7k
0
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1
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2.1k
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Comment: C: DESeq2 Multi factor, multi time point comparison design formula
5.7 years ago Simon Anders ★ 3.7k
0
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1
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1.3k
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Comment: C: RNA-seq data analysis with two species using DESeq2
5.7 years ago Simon Anders ★ 3.7k
0
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0
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13k
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Comment: C: Normalization by DEseq
6.1 years ago Simon Anders ★ 3.7k
0
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0
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4.6k
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Comment: C: Comparing between two differential expression analysis - two different fold chan
6.1 years ago Simon Anders ★ 3.7k
0
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0
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937
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Comment: C: Requesting help with RNA-Seq differential gene analysis
6.2 years ago Simon Anders ★ 3.7k
0
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0
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4.6k
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Comment: C: Comparing between two differential expression analysis - two different fold chan
6.2 years ago Simon Anders ★ 3.7k
1
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0
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795
views
Comment: C: Errors of loading HilbertVisGUI
6.2 years ago Simon Anders ★ 3.7k
1
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1
reply
3.3k
views
Comment: C: DESeq2 results export padj sorted
6.3 years ago Simon Anders ★ 3.7k
0
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1
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3.3k
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Comment: C: DESeq2 results export padj sorted
6.3 years ago Simon Anders ★ 3.7k
0
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1
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3.3k
views
Comment: C: DESeq2 results export padj sorted
6.3 years ago Simon Anders ★ 3.7k
1
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0
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1.8k
views
Comment: C: Matrix not full rank - DESeq2
6.3 years ago Simon Anders ★ 3.7k
0
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0
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2.8k
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Comment: C: Error: C stack usage when installing Txdb package
6.4 years ago Simon Anders ★ 3.7k
0
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1
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2.8k
views
Comment: C: Error: C stack usage when installing Txdb package
6.4 years ago Simon Anders ★ 3.7k
0
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1
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2.8k
views
Comment: C: Error: C stack usage when installing Txdb package
6.4 years ago Simon Anders ★ 3.7k
0
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0
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2.8k
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Comment: C: Error: C stack usage when installing Txdb package
6.4 years ago Simon Anders ★ 3.7k
0
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1
reply
2.8k
views
Comment: C: Error: C stack usage when installing Txdb package
6.4 years ago Simon Anders ★ 3.7k
0
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2
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2.8k
views
Comment: C: Error: C stack usage when installing Txdb package
6.4 years ago Simon Anders ★ 3.7k
0
votes
1
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1.9k
views
Comment: C: Standardizing gene symbols
6.4 years ago Simon Anders ★ 3.7k
0
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1
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724
views
Comment: C: deseq2 low read input
6.5 years ago Simon Anders ★ 3.7k
0
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1
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4.7k
views
Comment: C: DESeq2 unequal sample sizes
6.5 years ago Simon Anders ★ 3.7k
0
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1
reply
2.4k
views
Comment: C: Sample label swap in HTML results
6.8 years ago Simon Anders ★ 3.7k
0
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2
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2.4k
views
Comment: C: Sample label swap in HTML results
6.8 years ago Simon Anders ★ 3.7k
0
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1
reply
5.7k
views
Comment: C: P values from Deseq Analysis
6.9 years ago Simon Anders ★ 3.7k
0
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0
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5.7k
views
Comment: C: P values from Deseq Analysis
6.9 years ago Simon Anders ★ 3.7k
3
votes
1
reply
2.1k
views
Comment: C: DESeq2: interaction term as in limma
7.0 years ago Simon Anders ★ 3.7k
1
vote
2
replies
17k
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Comment: C: standard error value (lfcSE) returned by DeSeq2
7.0 years ago Simon Anders ★ 3.7k
0
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1
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17k
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Comment: C: standard error value (lfcSE) returned by DeSeq2
7.0 years ago Simon Anders ★ 3.7k
0
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1
reply
2.9k
views
Comment: C: Design: DESeq2 and continuous variables
7.4 years ago Simon Anders ★ 3.7k
0
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0
replies
4.1k
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Comment: C: DESEQ2 linear model of dose
7.5 years ago Simon Anders ★ 3.7k
0
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1
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4.1k
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Comment: C: DESEQ2 linear model of dose
7.5 years ago Simon Anders ★ 3.7k
0
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1
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4.1k
views
Comment: C: DESEQ2 linear model of dose
7.5 years ago Simon Anders ★ 3.7k
0
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1
reply
4.1k
views
Comment: C: DESEQ2 linear model of dose
7.5 years ago Simon Anders ★ 3.7k
0
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0
replies
1.2k
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Comment: C: DESeq1 design, result and inference
7.6 years ago Simon Anders ★ 3.7k
0
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0
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3.6k
views
Comment: C: How to properly normalize a single-cell sparse matrix?
7.6 years ago Simon Anders ★ 3.7k
0
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1
reply
4.0k
views
Comment: C: Disagreement between TMM (edgeR) and RLE (DESeq) normalisation for single-cell d
7.6 years ago Simon Anders ★ 3.7k
0
votes
0
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607
views
Comment: C: 3 replicates vs 2 replicates biased outcome?
7.7 years ago Simon Anders ★ 3.7k
0
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0
replies
4.6k
views
Comment: C: Does DESeq2 or edgeR take care of random effect in the GLM
7.8 years ago Simon Anders ★ 3.7k
1
vote
1
reply
26k
views
Comment: C: DESEq2 Paired samples Before and after treatment
7.8 years ago Simon Anders ★ 3.7k
0
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0
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1.6k
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Comment: C: DESeq2 product of sizeFactors is not 1
8.0 years ago Simon Anders ★ 3.7k
2
votes
2
replies
13k
views
Comment: C: how DESeq calculates p-value ?
8.2 years ago Simon Anders ★ 3.7k
0
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0
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1.9k
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Comment: C: GRangesList and `seqlevels<-` with force=TRUE
8.2 years ago Simon Anders ★ 3.7k
0
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1
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1.9k
views
Comment: C: GRangesList and `seqlevels<-` with force=TRUE
8.2 years ago Simon Anders ★ 3.7k
0
votes
2
replies
4.2k
views
Comment: C: looping through a GRangesList object
8.2 years ago Simon Anders ★ 3.7k
169 results • Page 1 of 4
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