User: René Dreos

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René Dreos80
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8 years, 6 months ago
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9 years, 11 months ago
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Posts by René Dreos

<prev • 8 results • page 1 of 1 • next >
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flowQ library loading error
... Dear BioC list, I have a strange error when I try to load flowQ on R 2.13.0. The installation went fine, with no errors but I am not able to load the library. My apologies if the error is been solved already, please be patient (! :-)), I could not find any solution on this list or on Google. This i ...
flowq written 8.5 years ago by René Dreos80 • updated 3.1 years ago by davide.franchina10
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Answer: A: Script to save plots in Pdf format ( DNAcopy)
... Hi Nathalie, if I understand correctly, you have 60 DNAcopy object you need to plot. The following code will do the trick: The first step is to create a vector with the name of the 60 objects: object.list <- c("DNAcopy1", "DNAcopy2"..."DNAcopy60") than do a loop to plot them as pdf file: for ...
written 8.7 years ago by René Dreos80
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Answer: A: How to extract lfc & p-values for probes identified with a Venn diagram
... Hi Moritz to extract the fold changes of your target genes you should do: > ebFit$coefficients[kd_only_up,] and to extract all the stats have a look at the command topTable (and then use the result as the above example). For the GO enrichment I normally use the topGO library best r On 15 N ...
written 9.1 years ago by René Dreos80
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Answer: A: aroma.affymetrix package installation problem
... Hi Yan, It seems to me that R is not able to open a connection. You should try setting the variable: Sys.putenv("http_proxy" = "http://127.0.0.1:8228") the "http://127.0.0.1:8228" is the configuration for my mac, you should check your system for the right proxy and port. best r On 15 November 2 ...
written 9.1 years ago by René Dreos80
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BioMaRt query
... Dear BioC mailing list, I am trying to annotate Arabidopsis ATH1 genome array results using biomaRt, but it looks like some of the probesets are not annotated in biomaRt database. Here is one example: > library(biomaRt) > AT.db <- useMart(biomart="plant_mart_6", dataset="athaliana_eg_gene ...
ath1121501 annotate written 9.2 years ago by René Dreos80 • updated 9.2 years ago by James W. MacDonald52k
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Comment: C: BioMart error
... Dear Hans, thank you very much for your feedback. Now everything is working! best r On 6 September 2010 12:20, Hans-Rudolf Hotz wrote: > René > > Have you tried again in the meantime, as this looks more like a temporary > glitch on the biomart backend? > > ie it works form me: ...
written 9.3 years ago by René Dreos80
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BioMart error
... Dear BioC mailing-list, I came across this error using the latest R version and BioMart: > library("biomaRt") > mart = useMart("ensembl") > ensembl = useDataset("hsapiens_gene_ensembl", mart=mart) Checking attributes ... ok Checking filters ... ok > EGsub = c("1635_at"="25", "39329_at" ...
go bsgenome biomart written 9.3 years ago by René Dreos80 • updated 9.3 years ago by Hotz, Hans-Rudolf400
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RMySQL loading problem
... Dear Bioconductor mailing list, I am runing R 2.9 and I am having some problems loading RMySQL library: > library(RMySQL) Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/Library/Frameworks/R.framework/Resources/library/RMySQL/libs/x86_64/ RMySQL.so': dlopen( ...
written 9.9 years ago by René Dreos80 • updated 9.9 years ago by Seth Falcon7.4k

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Popular Question 8.5 years ago, created a question with more than 1,000 views. For flowQ library loading error

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