User: Thomas Hampton
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Posts by Thomas Hampton
... Great question. At some point, quantile normalization would not be expected to work, because the true distribution of expression values under different conditions would just be too different. You'd see "differential expression" that was an artifact of normalization. I have seen RMA cause that with ...
... I have used rank products ad limma head to head many times, so I think I understand your question. I can imagine scenarios where limma would provide a longer list, but I have not observed it myself. It is in many ways amazing that the two tests generate similar lists at all, given the enormous dif ...
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