User: Alex Rodriguez

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40
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New User
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Last seen:
9 years, 7 months ago
Joined:
9 years, 8 months ago
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a********@bsd.uchicago.edu

Posts by Alex Rodriguez

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Comment: C: PdInfoBuilder for nimblegen array
... Hi Benilton, Sorry, I copied the wrong segment of xys files. Here is the header of the actual xys file which is different than the pre-made package, I think. >head 41779702_635.xys # software=NimbleScan version=2.5.28 imagefile=/nfs/bioinfo/production/analysis/active/21863y/41779702_635. tif d ...
written 9.6 years ago by Alex Rodriguez40
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Comment: C: PdInfoBuilder for nimblegen array
... Hi Benilton, Here is a sample of one of the xys files: >head 136413_532.xys # software=NimbleScan HD2-beta version=2.4.18 imagefile=./136413_532.tif designfile=/nfs/designs/Feinberg_HG18_Me_HX1.ndf designname=Feinberg_HG18_Me _HX1 designid=6353 date=Thu Oct 04 18:13:16 CDT 2007 border=0 ul_ ...
written 9.6 years ago by Alex Rodriguez40
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Comment: C: PdInfoBuilder for nimblegen array
... Hi Benilton, Thanks for your prompt reply! The .xys file were created from .pair file which are from NimbleScan. Here is my output for sessionInfo(): > sessionInfo() R version 2.10.1 (2009-12-14) x86_64-unknown-linux-gnu locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.U ...
written 9.7 years ago by Alex Rodriguez40
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PdInfoBuilder for nimblegen array
... Hi, I am new using pdInfoBuilder, so I may be missing something. I am trying to use pdInfoBuilder to make an annotation package. However, I get an error after the makePdInfoPackage(seed, destDir = "./") command. Error in aggregate.data.frame(as.data.frame(x), ...) : no rows to aggregate Has any ...
annotation organism oligo pdinfobuilder written 9.7 years ago by Alex Rodriguez40 • updated 9.7 years ago by Benilton Carvalho4.3k

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