User: Yvan

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Yvan60
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9 years, 5 months ago
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9 years, 6 months ago
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y**********@uni.no

Posts by Yvan

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loop over IRanges spaces
... Hello, I tried your code below, but and iI am not able to create the scoreRleList as weight could be only a integer list. > read_gff function(file="gff3.txt") { gff <- read.delim(file,header=FALSE) colnames(gff) <- c("seqname", "source", "feature", "start", "end", "scor ...
coverage convert rtracklayer assign written 9.4 years ago by Yvan60 • updated 9.4 years ago by Michael Lawrence11k
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Comment: C: loop over IRanges spaces
... Hello Patrick, Sorry for the late answer and thank you very much for these precisions. Maybe I should try to explain what I am trying to do. I am starting with a gff file produced by Nimblegen's NimbleScan software for a CGH high density array. Out of the nine columns, I am interested mainly in th ...
written 9.5 years ago by Yvan60
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Comment: C: loop over IRanges spaces
... Hello, Thank you both of you. I could could calculate the sliding window, but not as a Rle object, could not append values for the last w-1 position in the Rle object in order to take care of the size problem. So I did it like that: params <-RDApplyParams(rd,function(rd) append((diff(c(0,cumsu ...
written 9.5 years ago by Yvan60
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Comment: C: loop over IRanges spaces
... On 21/04/10 18:43, Michael Lawrence wrote: > > > On Wed, Apr 21, 2010 at 6:07 AM, Yvan > wrote: > > Hello List, > > I am confused about how to loop over a rangedData object. > I have this rangedData > > RangedData with 61 rows and 1 value column acr ...
written 9.5 years ago by Yvan60
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loop over IRanges spaces
... Hello List, I am confused about how to loop over a rangedData object. I have this rangedData RangedData with 61 rows and 1 value column across 3 spaces space ranges | score | 1 SCAFFOLD_1 [ 8, 8] | -0.09405 and the spaces are "SCAFFOLD_1" "SCAFFOLD_10" "SCAFFOLD_10 ...
written 9.5 years ago by Yvan60 • updated 9.5 years ago by Michael Lawrence11k
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Answer: A: loop over IRanges spaces
... Hello List, I am confused about how to loop over a rangedData object. I have this rangedData RangedData with 61 rows and 1 value column across 3 spaces space ranges | score | 1 SCAFFOLD_1 [ 8, 8] | -0.09405 and the spaces are "SCAFFOLD_1" "SCAFFOLD_10" "SCAFFOLD_10 ...
written 9.5 years ago by Yvan60

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