User: Patrick Schorderet

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50
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New User
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Last seen:
9 years, 7 months ago
Joined:
9 years, 7 months ago
Email:
p*****************@epfl.ch

Posts by Patrick Schorderet

<prev • 5 results • page 1 of 1 • next >
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Reading .bpmap files for homemade tiling arrays
... Hello everybody, I am trying to normalize some ChIP-chip data using rMAT and to do so, you have to feed your .bpmap to the program (the file contains information relating to the design of the Affymetrix tiling arrays). Unfortunately, I get an error saying I am working with doubles instead of the ...
rmat written 9.6 years ago by Patrick Schorderet50
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Comment: C: rMAT tutorial. Data file too large?
... Hello, I have rMAT installed and can access the data as well as load it. My R 'seems' to crash once I launch the ERnorm<-NormalizeProbes(ER, method="PairBinned",robust=TRUE) it takes up ca. 95%CPU for a very long time (I let it run for about 45' and then decided to stop it) with a "R (not respo ...
written 9.6 years ago by Patrick Schorderet50
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Answer: A: rMAT tutorial. Data file too large?
... Sorry for the lack of precision in my previous post. What I meant by 'crashes' is that in my Force Quit Application, I have a little "(not responding)" next to my R. I have tried to work with R64 but this doesn't help either. Am I really gonna have to buy a new computer...? Thanks for the help, P ...
written 9.6 years ago by Patrick Schorderet50
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rMAT tutorial. Data file too large?
... Hello everybody, I wanted to use rMAT for some of my ChIP-chip analysis and tried to follow the tutorial (http://wiki.rglab.org/index.php? title=Public:RMAT). I have updated everything (R version 2.11.0 and rMAT version 2.4.0) and have downloaded the tutorial data file (EM). I have managed to do e ...
preprocessing gui rmat written 9.6 years ago by Patrick Schorderet50
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Problems using rMAT tutorial
... Dear All, I have been trying to use rMAT and its tutorial (http://wiki.rglab.org/index.php?title=Public:RMAT ). I am working with MacOSX and a recent R version. I was able to install rMAT (at least it loads correctly in R when launching it from the package manager window) as well as the data set w ...
gui rmat written 9.6 years ago by Patrick Schorderet50 • updated 9.6 years ago by Wolfgang Huber13k

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