User: Barbara Bo-Ju Shih

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40
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New User
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Last seen:
7 years, 6 months ago
Joined:
9 years, 6 months ago
Email:
b*************@manchester.ac.uk

Posts by Barbara Bo-Ju Shih

<prev • 4 results • page 1 of 1 • next >
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Question regarding COA plot generated by made4 package
... Dear all, I am wondering how I should label the quadrants in the coa plot generated by made4 package (see figure 3, top right in http://www.bioc onductor.org/packages/2.9/bioc/vignettes/made4/inst/doc/introduction.p df ). Also, what does the "d" value on the top right hand corner mean? Thank you ve ...
made4 written 7.5 years ago by Barbara Bo-Ju Shih40
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meta-analysis with RankProd
... Hi, I am trying to carry out meta-analysis on 4 sets of gene expression microarray data using RankProd. I'm having the following problems: - 3 of the data sets are one channel (with normalised intensity) and one is two channel (common reference) with log 2 ratio of the two channels. Can I just log2- ...
rankprod written 7.7 years ago by Barbara Bo-Ju Shih40 • updated 7.7 years ago by Maciej Jończyk720
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pdInfoBuilder
... Dear all, I have created a annotation package using pdInfoBuilder. It says that the package needs to be installed, but I'm not sure how to do so. I checked some of the archived responses and from my understanding, Rtools need to be used. I tried to follow the instructions on http://cran.r-project.o ...
annotation pdinfobuilder written 8.6 years ago by Barbara Bo-Ju Shih40 • updated 8.6 years ago by Benilton Carvalho4.3k
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help with SPIA package
... Hi, I am currently trying to use the SPIA bioconductor package and I came across an error that I am not sure how to solve it. I used the contrast.fit method from Limma to obtain a list of significantly differentially expressed genes. Following that, I wanted to use the SPIA package, but it kept on ...
organism limma spia written 9.5 years ago by Barbara Bo-Ju Shih40

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