User: branislav misovic

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Posts by branislav misovic

<prev • 24 results • page 2 of 3 • next >
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Comment: C: ?daily digest support.bioconductor.org
... thanx i did, they will add it : https://github.com/ialbert/biostar-central/issues/391 ...
written 4.0 years ago by branislav misovic120
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?daily digest support.bioconductor.org
...  hi  ,  just  small  proposal :    is it possible to add  Daily digest feature for all tags followed  ( i didn't  see option in profile settings ) . This was important  feature of the old mailing list.   Thing is, if one is following few tags like edgeR ,limma etc.  , then one will  get a lot  of e ...
support.bioconductor.org written 4.0 years ago by branislav misovic120
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Answer: A: Analyzing Open source PPI databases
... hi, I would check : http://www.bioconductor.org/packages/devel/bioc/html/RpsiXML.html has 8 DBs  and  STRING: http://www.bioconductor.org/packages/release/bioc/html/STRINGdb.html ...  but   also browse   bioC views: http://www.bioconductor.org/packages/release/BiocViews.html#___GraphAndNetwork h ...
written 4.1 years ago by branislav misovic120
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Comment: C: Postdoc bioinformatics in proteomics
...  hi,  link asks password ? ...
written 4.2 years ago by branislav misovic120
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Answer: A: A good alternative for RDavidWebService ??
... hi Alakatos  , just additional tip ...     Once you get the KEGG  P.value scores from limma or others ...  check the dynamics & visualising network  in the top X KEGG  pathways by  using  great libs: 1) http://www.bioconductor.org/packages/release/bioc/html/pathview.html https://www.youtube.com/ ...
written 4.3 years ago by branislav misovic120
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Comment: C: GenomicFeatures::getPromoterSeq error when selecting all promoters sequences (i
... thank you ,  also for the lesson about unplaced ones ... ...
written 4.8 years ago by branislav misovic120
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GenomicFeatures::getPromoterSeq error when selecting all promoters sequences (in mice)
... hi ,   When running the search for all promoters sequences  in mice , with  1000 bp  up /downstream, parameter the getPromoterSeq  works fine,  but increasing the up/downstream parameter to say 5000  or 2000 it errors  (log bellow): Any advice appreciated . Branko --------------------------------- ...
genomicfeatures getpromoterseq written 4.8 years ago by branislav misovic120 • updated 4.8 years ago by James W. MacDonald51k
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Comment: C: global alignment in Biostrings , Memory fails when seq. lengths around 50K bp
...    Thank you for the clear  explanation & message fix,   and of course for the Biostrings magic . I thought this limitation was out from  R.3  (  maybe this is one of the reasons there are few   biocResistors  out there : ) Browsing the  web i found related  post where hey talk about   64bit in ...
written 4.8 years ago by branislav misovic120
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Comment: C: global alignment in Biostrings , Memory fails when seq. lengths around 50K bp
... : )))  I guess it worked at the end but will check when posting new question . ...
written 4.8 years ago by branislav misovic120
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Answer: A: BLAST export library 'annotate'
...  Hi Benjamin  when you search for function it is good to list functions in the packages you already use  or type "??fasta "  or  search R.docs website.  Biostrings developers made already writeXStringSet (In your example i used only first 70 NN as i hoped response from website would be faster ... ) ...
written 4.8 years ago by branislav misovic120

Latest awards to branislav misovic

Popular Question 8 months ago, created a question with more than 1,000 views. For msa package installation problem
Supporter 2.3 years ago, voted at least 25 times.
Scholar 4.0 years ago, created an answer that has been accepted. For A: Analyzing Open source PPI databases

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