Admin: Dan Tenenbaum

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Dan Tenenbaum ♦♦ 8.2k
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I was in the Bioconductor group at Fred Hutchinson Cancer Research Center in Seattle, WA, USA.

Posts by Dan Tenenbaum

<prev • 1,024 results • page 2 of 103 • next >
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Comment: C: Can't load package "org.Hs.eg.db"
... Actually this is not the same problem. The original poster's problem had to to with firewalls and installing the package. You are able to install it but not load it.  As a side note, you should use biocLite() to install Bioconductor packages, then you won't have to worry about getting the wrong ver ...
written 17 months ago by Dan Tenenbaum ♦♦ 8.2k
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Comment: C: Severe problems with bioc installation of source packages (R 3.3 epel)
... How did you install/build R? DId you check it out from Subversion? If so did you run  tools/rsync-recommended  after checking it out? If not please do that. ...
written 17 months ago by Dan Tenenbaum ♦♦ 8.2k
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Answer: A: Severe problems with bioc installation of source packages (R 3.3 epel)
... Try    sudo yum install libcurl-devel   ...
written 17 months ago by Dan Tenenbaum ♦♦ 8.2k
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Comment: C: Making package compatible with old version of R/Bioconductor
... Theoretically possible (in some cases) but completely not supported and very likely to cause problems. I would NOT tell your reviewer to install a package in this unsupported manner. They should upgrade R. ...
written 17 months ago by Dan Tenenbaum ♦♦ 8.2k
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Answer: A: Making package compatible with old version of R/Bioconductor
... The short answer is no. At any given time we only build two versions of Bioconductor release (currently 3.3) and devel (currently 3.4).  We stopped 3.2 builds before the most recent release this spring.  ...
written 17 months ago by Dan Tenenbaum ♦♦ 8.2k
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News: New Package Submission Process
... The new GitHub-based new package contribution system is up and running. To contribute a Bioconductor package, file a new issue at https://github.com/Bioconductor/Contributions/issues/new Read the full instructions here: https://github.com/Bioconductor/Contributions as well as the updated packa ...
news submission written 17 months ago by Dan Tenenbaum ♦♦ 8.2k
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Comment: C: Unable to load/install rtracklayer (v1.33.2) on OS X (possibly SSL-related?)
... Thanks Michael! Would it make sense to backport this change to release? ...
written 17 months ago by Dan Tenenbaum ♦♦ 8.2k
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Comment: C: workflow.R in BioC 3.3
... The workflow builders have been updated to R-3.3 and Bioconductor-3.3. However some workflows are not building. We're working with the authors to make that happen. Then they will be available without the error message. ...
written 17 months ago by Dan Tenenbaum ♦♦ 8.2k
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Comment: C: question about KEGGREST
... That does not produce an error for me. I wonder if there is an issue with your network connection. ...
written 17 months ago by Dan Tenenbaum ♦♦ 8.2k
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Comment: C: workflow.R in BioC 3.3
... This is correct. This will happen soon.  ...
written 18 months ago by Dan Tenenbaum ♦♦ 8.2k

Latest awards to Dan Tenenbaum

Appreciated 8 months ago, created a post with more than 5 votes. For Bioconductor Git/GitHub Mirrors
Popular Question 9 months ago, created a question with more than 1,000 views. For Bioconductor 2.13 is released
Popular Question 9 months ago, created a question with more than 1,000 views. For Bioconductor 2.13 is released
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: "rstudio initialization error: unable to connect to service" after logging in to
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: How to get rid of "Update all/some/none? [a/s/n]:"
Popular Question 19 months ago, created a question with more than 1,000 views. For New Package Submission Process
Popular Question 19 months ago, created a question with more than 1,000 views. For Bioconductor 2.14 is released
Oracle 19 months ago, created more than 1,000 posts (questions + answers + comments).
Popular Question 19 months ago, created a question with more than 1,000 views. For Bioconductor 2.13 is released
Scholar 19 months ago, created an answer that has been accepted. For A: Package lists and other questions about the site
Scholar 19 months ago, created an answer that has been accepted. For A: Package lists and other questions about the site
Scholar 21 months ago, created an answer that has been accepted. For A: How to get rid of "Update all/some/none? [a/s/n]:"
Scholar 21 months ago, created an answer that has been accepted. For A: best way to terminate a Docker-based bioconductor/RStudio session?
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: "rstudio initialization error: unable to connect to service" after logging in to
Scholar 23 months ago, created an answer that has been accepted. For A: best way to terminate a Docker-based bioconductor/RStudio session?
Scholar 23 months ago, created an answer that has been accepted. For A: best way to terminate a Docker-based bioconductor/RStudio session?
Scholar 23 months ago, created an answer that has been accepted. For A: best way to terminate a Docker-based bioconductor/RStudio session?
Scholar 2.1 years ago, created an answer that has been accepted. For A: best way to terminate a Docker-based bioconductor/RStudio session?
Appreciated 2.1 years ago, created a post with more than 5 votes. For Bioconductor 3.0 is released!
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: how can I access my local files (data, R-scripts) from the *docker* R/Bioconduct
Scholar 2.1 years ago, created an answer that has been accepted. For A: best way to terminate a Docker-based bioconductor/RStudio session?
Scholar 2.1 years ago, created an answer that has been accepted. For A: Error updating packages: couldn’t understand kern.osversion
Scholar 2.1 years ago, created an answer that has been accepted. For A: how can I access my local files (data, R-scripts) from the *docker* R/Bioconduct
Scholar 2.3 years ago, created an answer that has been accepted. For A: What is the best way to get help on Bioconductor packages?
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: What is the best way to get help on Bioconductor packages?

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