Admin: Dan Tenenbaum

gravatar for Dan Tenenbaum
Dan Tenenbaum ♦♦ 8.2k
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United States
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8 years, 1 month ago
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I was in the Bioconductor group at Fred Hutchinson Cancer Research Center in Seattle, WA, USA.

Posts by Dan Tenenbaum

<prev • 1,024 results • page 2 of 103 • next >
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Comment: C: Can't load package "org.Hs.eg.db"
... Actually this is not the same problem. The original poster's problem had to to with firewalls and installing the package. You are able to install it but not load it.  As a side note, you should use biocLite() to install Bioconductor packages, then you won't have to worry about getting the wrong ver ...
written 2.4 years ago by Dan Tenenbaum ♦♦ 8.2k
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Comment: C: Severe problems with bioc installation of source packages (R 3.3 epel)
... How did you install/build R? DId you check it out from Subversion? If so did you run  tools/rsync-recommended  after checking it out? If not please do that. ...
written 2.4 years ago by Dan Tenenbaum ♦♦ 8.2k
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Answer: A: Severe problems with bioc installation of source packages (R 3.3 epel)
... Try    sudo yum install libcurl-devel   ...
written 2.4 years ago by Dan Tenenbaum ♦♦ 8.2k
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Comment: C: Making package compatible with old version of R/Bioconductor
... Theoretically possible (in some cases) but completely not supported and very likely to cause problems. I would NOT tell your reviewer to install a package in this unsupported manner. They should upgrade R. ...
written 2.4 years ago by Dan Tenenbaum ♦♦ 8.2k
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Answer: A: Making package compatible with old version of R/Bioconductor
... The short answer is no. At any given time we only build two versions of Bioconductor release (currently 3.3) and devel (currently 3.4).  We stopped 3.2 builds before the most recent release this spring.  ...
written 2.4 years ago by Dan Tenenbaum ♦♦ 8.2k
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News: New Package Submission Process
... The new GitHub-based new package contribution system is up and running. To contribute a Bioconductor package, file a new issue at https://github.com/Bioconductor/Contributions/issues/new Read the full instructions here: https://github.com/Bioconductor/Contributions as well as the updated packa ...
news submission written 2.4 years ago by Dan Tenenbaum ♦♦ 8.2k
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Comment: C: Unable to load/install rtracklayer (v1.33.2) on OS X (possibly SSL-related?)
... Thanks Michael! Would it make sense to backport this change to release? ...
written 2.4 years ago by Dan Tenenbaum ♦♦ 8.2k
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Comment: C: workflow.R in BioC 3.3
... The workflow builders have been updated to R-3.3 and Bioconductor-3.3. However some workflows are not building. We're working with the authors to make that happen. Then they will be available without the error message. ...
written 2.4 years ago by Dan Tenenbaum ♦♦ 8.2k
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Comment: C: question about KEGGREST
... That does not produce an error for me. I wonder if there is an issue with your network connection. ...
written 2.4 years ago by Dan Tenenbaum ♦♦ 8.2k
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Comment: C: workflow.R in BioC 3.3
... This is correct. This will happen soon.  ...
written 2.4 years ago by Dan Tenenbaum ♦♦ 8.2k

Latest awards to Dan Tenenbaum

Popular Question 19 months ago, created a question with more than 1,000 views. For Bioconductor Git/GitHub Mirrors
Popular Question 19 months ago, created a question with more than 1,000 views. For Bioconductor 3.0 is released!
Appreciated 19 months ago, created a post with more than 5 votes. For Bioconductor Git/GitHub Mirrors
Popular Question 19 months ago, created a question with more than 1,000 views. For Bioconductor 2.13 is released
Popular Question 20 months ago, created a question with more than 1,000 views. For Bioconductor 2.13 is released
Popular Question 20 months ago, created a question with more than 1,000 views. For Bioconductor 2.13 is released
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Bioconductor 2.14 is released
Popular Question 2.5 years ago, created a question with more than 1,000 views. For New Package Submission Process
Teacher 2.5 years ago, created an answer with at least 3 up-votes. For A: How to get rid of "Update all/some/none? [a/s/n]:"
Teacher 2.5 years ago, created an answer with at least 3 up-votes. For A: "rstudio initialization error: unable to connect to service" after logging in to
Oracle 2.5 years ago, created more than 1,000 posts (questions + answers + comments).
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Bioconductor 2.13 is released
Scholar 2.5 years ago, created an answer that has been accepted. For A: Package lists and other questions about the site
Scholar 2.5 years ago, created an answer that has been accepted. For A: Package lists and other questions about the site
Scholar 2.6 years ago, created an answer that has been accepted. For A: How to get rid of "Update all/some/none? [a/s/n]:"
Scholar 2.6 years ago, created an answer that has been accepted. For A: best way to terminate a Docker-based bioconductor/RStudio session?
Teacher 2.8 years ago, created an answer with at least 3 up-votes. For A: "rstudio initialization error: unable to connect to service" after logging in to
Scholar 2.8 years ago, created an answer that has been accepted. For A: best way to terminate a Docker-based bioconductor/RStudio session?
Scholar 2.8 years ago, created an answer that has been accepted. For A: best way to terminate a Docker-based bioconductor/RStudio session?
Scholar 2.8 years ago, created an answer that has been accepted. For A: best way to terminate a Docker-based bioconductor/RStudio session?
Scholar 3.0 years ago, created an answer that has been accepted. For A: best way to terminate a Docker-based bioconductor/RStudio session?
Appreciated 3.0 years ago, created a post with more than 5 votes. For Bioconductor 3.0 is released!
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: how can I access my local files (data, R-scripts) from the *docker* R/Bioconduct
Scholar 3.0 years ago, created an answer that has been accepted. For A: best way to terminate a Docker-based bioconductor/RStudio session?
Scholar 3.0 years ago, created an answer that has been accepted. For A: Error updating packages: couldn’t understand kern.osversion

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