User: S T

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S T60
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60
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New User
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Last seen:
9 years ago
Joined:
9 years, 2 months ago
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e******@gmail.com

Posts by S T

<prev • 6 results • page 1 of 1 • next >
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Comment: C: sva package
... Dear Sean, Thanks very much. I downloaded from there and installed it. However, the error message states > utils:::menuInstallLocal() package 'sva' successfully unpacked and MD5 sums checked > library(sva) Error: package 'sva' was built before R 2.10.0: please re-install it Does this mean t ...
written 9.1 years ago by S T60
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sva package
... Dear users, I am having some trouble installing the SVA package for surrogate variable analysis > source("http://bioconductor.org/biocLite.R") BioC_mirror = http://www.bioconductor.org Change using chooseBioCmirror(). > biocLite("sva") Using R version 2.11.1, biocinstall version 2.6.9. Insta ...
sva written 9.1 years ago by S T60 • updated 9.1 years ago by Sean Davis21k
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Data from GEO in Methylumi
... Dear all, . Sorry, I am a novice user of Bioconductor. I saw that Methylumi can take either Final Report format or tab delimited formats. May I ask whether Methylumi can import Infinium methylation data from GEO - specifically GSE type files? . Thank you. . ENS [[alternative HTML version de ...
methylumi written 9.2 years ago by S T60 • updated 9.2 years ago by Sean Davis21k
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Comment: C: Data from GEO in Methylumi
... Dear Sean, Thanks very much for answering my question. . 1. Can GEOquery be used with DNA methylation data in view of the fact that the data itself is not just a summarised beta-value, but also includes the p-value of detection above background, and the values in the U and M channels. Will I be abl ...
written 9.2 years ago by S T60
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Answer: A: Geoquery problem - GSE file
... Thank you so much! The GUI now reads File stored at: C:\DOCUME~1\AdminNUS\LOCALS~1\Temp\Rtmp4MN2u9/GPL8490.soft Warning message: closing unused connection 3 () > Will I be able to use the methylumi package to read and analyse this type of data? Sorry, I read through the methylumi pdf but could ...
written 9.2 years ago by S T60
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Geoquery problem - GSE file
... Hello, I am an absolute beginner in using bioconductor. I would really appreciate some help if you have time. Thanks very much in advance. I have been trying to access a GSE file from GEO using GEOquery. I got the same error message as reported by David Martin on 8 June 2010. > gse <- getGE ...
geoquery written 9.2 years ago by S T60

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Popular Question 9.1 years ago, created a question with more than 1,000 views. For Geoquery problem - GSE file
Popular Question 9.1 years ago, created a question with more than 1,000 views. For Geoquery problem - GSE file

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