User: Reema Singh

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Reema Singh570
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Posts by Reema Singh

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Bioinformatics Minisymposium at the University of Dundee
... Dear All, Please join us on one day bioinformatics mini symposium organised by Prof. Geoff Barton [http://www.compbio.dundee.ac.uk/] at University of Dundee, 5th September 2014. Please go through the registration page to book your place [ https://www.eventbrite.co.uk/e/bioinformatics-minisymposium- ...
go written 5.4 years ago by Reema Singh570
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Answer: A: Bioinformatics Minisymposium at the University of Dundee
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written 5.4 years ago by Reema Singh570
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Answer: A: GLM common and trended dispersion EdgeR
... Dear Prof. Smyth, First of all, I am really very sorry for late reply. Sir, We are using both GLMcommon and Trended dispersion before estimating tagwise dispersion [ As mention in Section 1.4- Quick Start] for our analysis. I was just curious about the usage of these function. Thank you very muc ...
written 5.9 years ago by Reema Singh570
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Comment: C: GLM common and trended dispersion EdgeR.
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written 5.9 years ago by Reema Singh570
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Comment: C: GLM common and trended dispersion EdgeR.
... Hello Ryan, Thanks very much for the clarification. It really helps. Regards On Thu, Jan 9, 2014 at 12:40 PM, Ryan C. Thompson wrote: > 1) Is it fine to use both common and trended dispersion? >> > > You can estimate both common and trended dispersions on the same DGEList > ob ...
written 5.9 years ago by Reema Singh570
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GLM common and trended dispersion EdgeR.
... Dear All, I have a query regarding using estimateGLMCommonDisp and estimateGLMTrendedDisp. It has been mentioned in the EdgeR manual[*Section 2.8.2 :- Estimating Dispersion*] "Note that we need to estimate either common dispersion or trended dispersions prior to the estimation of tagwise dispersio ...
edger written 5.9 years ago by Reema Singh570
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Answer: A: GLM common and trended dispersion EdgeR.
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written 5.9 years ago by Reema Singh570
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Comment: C: EdgeR glm based analysis
... Dear Prof. Smyth, Thank you for the reply. I am really very sorry for asking new question in the this thread. Next time I will Keep this in mind. Kind Regards On Fri, Jan 3, 2014 at 4:05 AM, Gordon K Smyth wrote: > See sections 2.5 (Normalization) and 2.10 of the edgeR User's Guide. > & ...
written 5.9 years ago by Reema Singh570
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Answer: A: EdgeR glm based analysis
... Dear Prof. Smyth, Thankyou very much for the clasrification. Though, I would like to ask one more question regarding EdgeR. I want to known How to extract the normalized count using EdgeR?. I search though internet and found a reply by Mark ( https://stat.ethz.ch/pipermail/bioconductor/2012-July/0 ...
written 6.0 years ago by Reema Singh570
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Answer: A: gage and GO analysis
... Hi Tingzhu, I have used these command for preparing input for RNASeq GSEA. I hope these command works fine for you as well. Here's the command for preparing go.sets.hs and go.subs.hs:- 1) Prepare a tab seperated table with three coloumns( ID, GO, Type), Where ID is geneId, GO is your GO Id and Ty ...
written 6.0 years ago by Reema Singh570

Latest awards to Reema Singh

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