User: Reema Singh

gravatar for Reema Singh
Reema Singh570
Reputation:
570
Status:
Trusted
Location:
Last seen:
5 years, 4 months ago
Joined:
8 years, 11 months ago
Email:
r*********@gmail.com

Posts by Reema Singh

<prev • 56 results • page 2 of 6 • next >
0
votes
1
answer
495
views
1
answers
Answer: A: EdgeR glm based analysis
... An embedded and charset-unspecified text was scrubbed... Name: not available URL: ...
written 5.9 years ago by Reema Singh570
0
votes
1
answer
495
views
1
answer
EdgeR glm based analysis
... Dear All, First, wish you all a very happy and prosporous New Year. In EdgeR manual[Case Studies section], for two group comparison, generally exactTest usage is shown, whereas for the multiple group comparison glm based analysis has been shown. In 1.4 quick start section, use of glm based analysi ...
edger written 5.9 years ago by Reema Singh570
0
votes
1
answer
1.2k
views
1
answers
Comment: C: edgeR Design Matrix
... HI Jim, Here, strains are different clones and two technical replicates from each clone/strain. So it means Here DEG can be identify using two type of comparing? 1) Differentiall Expression between Control vs KO. 2) Differential Expression b/n Control vs KO after adjusting Strain differences Rega ...
written 5.9 years ago by Reema Singh570
0
votes
1
answer
1.2k
views
1
answers
Comment: C: edgeR Design Matrix
... HI Jim, I am really sorry, I made a typing mistake in my table. I actually have four different strain. This is the actual table:- *1) Sample table for design matrix* Sample Strain Condition KO1-A 1 KO ...
written 5.9 years ago by Reema Singh570
0
votes
1
answer
1.2k
views
1
answers
Comment: C: edgeR Design Matrix
... Hi Jim, My apologies, I didn't mean to take this offline. But next time,I will keep this in mind. Thank you so much for your clarification on this design matrix. It really helps me a lot. So for finding DEG after taking strain variability into consideration, I should follow this: Straing <- f ...
written 5.9 years ago by Reema Singh570
0
votes
1
answer
627
views
1
answers
Answer: A: edge R exactTest output looks odd - PLEASE HELP!
... Hi Audra, Your row names of your tables are very long,which disrupt the formatting of your table. When you generate count table at that time, keep your row names (gene names) small and then try. I hope this will works. Regards On Sat, Dec 28, 2013 at 5:33 AM, Audra [guest] wrote: > > Hi, ...
written 5.9 years ago by Reema Singh570
0
votes
1
answer
1.2k
views
1
answers
Comment: C: edgeR Design Matrix
... An embedded and charset-unspecified text was scrubbed... Name: not available URL: ...
written 5.9 years ago by Reema Singh570
0
votes
1
answer
1.2k
views
1
answers
Comment: C: edgeR Design Matrix
... Hello Jim, Thanks very much. I tried this design matrix and it works great. The contrast(I am using) first finds the DEG based on strain difference and then between control and KO. The resulting DEG number is very low. Here's my contrast my.ctst <- makeContrasts(deg=(trt_srtControl_3-trt_srtCon ...
written 5.9 years ago by Reema Singh570
0
votes
1
answer
1.2k
views
1
answer
edgeR Design Matrix
... Dear All, I have some queries regarding design matrix for two group(Control vs. KO) Differential expression.I am using edgeR for this. Here is the ording of my question:- 1) Sample table for design matrix, 2) Design matrix, 3) Questions. *1) Sample table for design matrix* Sample ...
edger written 5.9 years ago by Reema Singh570
0
votes
1
answer
1.2k
views
1
answers
Answer: A: edgeR Design Matrix
... An embedded and charset-unspecified text was scrubbed... Name: not available URL: ...
written 5.9 years ago by Reema Singh570

Latest awards to Reema Singh

Popular Question 5.3 years ago, created a question with more than 1,000 views. For RNASeq:- getting Zero Count
Popular Question 5.3 years ago, created a question with more than 1,000 views. For how to combine p values?
Popular Question 5.3 years ago, created a question with more than 1,000 views. For how to combine p values?
Popular Question 5.3 years ago, created a question with more than 1,000 views. For How to extract Phenotype data from GSE

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 225 users visited in the last hour