User: Radhouane Aniba
Radhouane Aniba • 240
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Comment:
C: Gene Lists and Genomes
... 2011/5/5 Steve Lianoglou
> Hi,
>
> On Thu, May 5, 2011 at 12:25 PM, Radhouane Aniba
> wrote:
> > Thanks Tim,
> >
> > Actually I have a predicted list of miRNA binding sites targetting
> specific
> > genes in 4 genomes.
> >
> > What I am trying to ...
written 8.6 years ago by
Radhouane Aniba • 240
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Comment:
C: Gene Lists and Genomes
... Thanks Tim,
Actually I have a predicted list of miRNA binding sites targetting
specific
genes in 4 genomes.
What I am trying to find is the characteristics of these Genes {g} for
a
specific genome {G} in term of GO enrichement and KEGG enrichment.
My starting point is a file with a list of ENSEMB ...
written 8.6 years ago by
Radhouane Aniba • 240
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... Hello everyone,
Well I am aware of some packages in Bioconductor that are useful for
measuring the GO or KEGG gene enrichment in a given file for a given
genome,
GOstats, GSEA etc ..
My question is : I am working with 4 differents genomes, I have gene
lists
for each of them, and I want for a given ...
written 8.6 years ago by
Radhouane Aniba • 240
• updated
8.6 years ago by
Tim Triche • 4.2k
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... Hi everyone,
I am looking for a bioconductor packages that take a gene list and
output
the enrichement in term of GO (which processes ? wchich functions ?)
and
eventually kegg pathways with pvalues that describes the enrichement
Any idea ? or help ?
Regards
Radhouane
--
*Radhouane Aniba*
*Bioin ...
written 8.7 years ago by
Radhouane Aniba • 240
• updated
8.7 years ago by
Yuan Hao • 240
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... Hello everyone,
Thank you again for your useful comments and ideas.
Finally the website is up and running, would you please join me there
and
send me your comments and suggestions.
Please feel free to ask any question you have.
The website URL is http://biocoders.net
Thank you again and hope you ...
written 8.9 years ago by
Radhouane Aniba • 240
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Comment:
C: Procedure
... Yes Sean, I meant public data.
Thank you for your answer.
Radhouane
2011/1/7 Sean Davis
>
>
> On Fri, Jan 7, 2011 at 3:12 PM, Radhouane Aniba
wrote:
>
>> Hi BioC,
>>
>> A lot of yeast cross species expression data analysis exist in
litterature
>> today, is i ...
written 8.9 years ago by
Radhouane Aniba • 240
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... Hi BioC,
A lot of yeast cross species expression data analysis exist in
litterature
today, is it a common procedure to process litterature for newly
expressed
species, let's stay in fungi for example.
Is it possible to do an automated scan through databases using
Bioconductor
? if yes which packag ...
written 8.9 years ago by
Radhouane Aniba • 240
• updated
8.9 years ago by
Sean Davis ♦ 21k
0
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Answer:
A: Idea that needs feedback
... Hello Rick,
Thank you for your email. I totally agree with you.
Could you please fill in this form in order to announce the website.
Here is the link *http://tinyurl.com/23aod4n
Thank you for the feedback
Radhouane
*
2011/1/3 Rick Frausto
> Hello Radhouane,
>
> As a new entrant into th ...
written 8.9 years ago by
Radhouane Aniba • 240
0
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Comment:
C: Idea that needs feedback
... Thanks guys for your positive and encouraging feedback
Could you please (if you did not filled it already) fill this form
http://bit.ly/eKwSxNand
send it to your collaborators friends and people you know working with
R/Bioc.
Hopefully a first version of the platform will be available in mid
januar ...
written 9.0 years ago by
Radhouane Aniba • 240
0
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Comment:
C: Idea that needs feedback
... Thank you all for your feedback, I want more of course don't hesitate
to
reply to this thread.
In order to get things more organized may be you can take a few moment
filling this small form
https://spreadsheets.google.com/viewform?formkey=dGpuSEk2ZlRRa2l2MWxXU
GdIQzBjelE6MQ
Thank you very much
Ra ...
written 9.0 years ago by
Radhouane Aniba • 240
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