User: federico.comoglio

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Switzerland
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Posts by federico.comoglio

<prev • 31 results • page 2 of 4 • next >
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Comment: C: Errors using wavClusteR package - "range cannot be determined from the supplied
... Sure, keep me posted. ...
written 3.1 years ago by federico.comoglio100
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Comment: C: Errors using wavClusteR package - "range cannot be determined from the supplied
... Thank you. The problem was then generated by Bowtie2, which allows gapped alignments. I would suggest realigning your data with bowtie. Let me know. ...
written 3.1 years ago by federico.comoglio100
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Answer: A: Errors using wavClusteR package - "range cannot be determined from the supplied
... Hi Stephen, to generate a substitution count table, wavClusteR splits a sorted Bam file by strand, flags all entries with an MD value other than perfect matches, and generates a GRangesList object where each slot contains the set of genomic regions that share the same MD. Elements of this list are ...
written 3.2 years ago by federico.comoglio100
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Comment: C: Errors using wavClusteR package - "range cannot be determined from the supplied
... Thanks a lot, I will get back to you asap. ...
written 3.2 years ago by federico.comoglio100
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Answer: A: Errors using wavClusteR package - "range cannot be determined from the supplied
... Hi Stephen, did you have the chance to run your code with version 2.5.2 of the package? ...
written 3.2 years ago by federico.comoglio100
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Comment: C: Errors using wavClusteR package - "range cannot be determined from the supplied
... Thank you, Martin. I am still working on the issue and I hope to get back with a proper answer in 2-3 days. ...
written 3.2 years ago by federico.comoglio100
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Answer: A: Errors using wavClusteR package - "range cannot be determined from the supplied
... Hi Stephen, thank you for posting your issue on the support site. I realised the tag for the threads related to wavClusteR has been consistently misspelled to wavcluter. Is it possible to edit it? Re. your issue, would it be possible for you to try out v2.5.2 in BioC devel and report back? As we d ...
written 3.2 years ago by federico.comoglio100
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Comment: C: Error: Failed to set session genome to...
... Hi Liz, I also do still experience the same issue and I didn't succeed in solving it, besides using the workaround you reported.  ...
written 4.1 years ago by federico.comoglio100
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Answer: A: Failed to set session genome to ...
... Currently, this works:  makeTxDbFromUCSC('dm6', tablename = 'refGene', url = 'http://genome-euro.ucsc.edu/cgi-bin/') ...
written 4.1 years ago by federico.comoglio100
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Comment: C: Failed to set session genome to ...
... Thank you, Michael. ...
written 4.1 years ago by federico.comoglio100

Latest awards to federico.comoglio

Popular Question 23 months ago, created a question with more than 1,000 views. For QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
Popular Question 3.1 years ago, created a question with more than 1,000 views. For Failed to set session genome to ...
Scholar 3.1 years ago, created an answer that has been accepted. For A: got an error with wavClusteR package; NSBS(i, x, exact = exact, upperBoundIsStri
Scholar 4.4 years ago, created an answer that has been accepted. For A: got an error with wavClusteR package; NSBS(i, x, exact = exact, upperBoundIsStri

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