User: MLSC MANIPAL

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MLSC MANIPAL120
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7 years, 8 months ago
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Posts by MLSC MANIPAL

<prev • 12 results • page 1 of 2 • next >
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Comment: C: listMart error with local biomart
... Hello Syed, Thanks for the suggestion. Regards, mlsc On Mon, Apr 2, 2012 at 3:54 PM, Syed Haider wrote: > Dear MLSC, > > From the path it looks you are trying to use biomaRt to communicate to > biomart v0.8 (release candidate 6). I believe biomaRt package does not > support the new ...
written 7.7 years ago by MLSC MANIPAL120
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listMart error with local biomart
... Hello friends, I was trying to set up local BioMart. BioMart web service is installed properly. But when I connect through biomaRt using listMart(), i get following error. > listMarts(host="http://10.3.2.36",port=9000, path="/home/mlsc/BioMart/release-0_8-candidate_6/") Request to BioMart web se ...
biomart written 7.7 years ago by MLSC MANIPAL120 • updated 7.7 years ago by Syed Haider30
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Help for snpMatrix
... Hi all, I would like to get genotype information from HapMap project. Hence, I am using snpMatrix's read.Hapmap.data, but when i try to get genotype information, it converts to numerical code form. hence can somebody please let me know how to get genotype information as it is in the HapMap file? &g ...
hapmap written 7.8 years ago by MLSC MANIPAL120 • updated 7.8 years ago by Vincent J. Carey, Jr.6.3k
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Help to access hapmap using biomart
... Hello All, I was trying to get hapmap data from Biomart. but with following code I could not be able to get anything. May I know is there anything wrong in this or alternative way to do this? > library("biomaRt") > myhapmap <- useMart("HapMap_rel27","hm27_variation_ceu") > ceu <- get ...
hapmap biomart written 7.8 years ago by MLSC MANIPAL120
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Strecth of N's in between reads
... Hello, I am working on NGS data generated by Illumina Hiseq 2000 and using CASAVA to convert .bcl file to fastq. As CASAVA replaces all adaptor sequences to N, I have ended up with a doubt. I find a lot of reads with N in between the read. I am assuming that may be adaptors and casava has replaced ...
convert written 7.9 years ago by MLSC MANIPAL120 • updated 7.9 years ago by Sean Davis21k
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A Function to find overlapping and flanking regions provided two different list of coordinates
... Dear Friends, I have two different list of chromosome coordinates (eg. chr1:start-end) and i want to find overlapping and flanking regions between these two lists. Hence can you please suggest me is there any build in functions available through any of the packages in the bioconductor. ...
written 8.4 years ago by MLSC MANIPAL120 • updated 8.4 years ago by Kasper Daniel Hansen6.4k
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How to get R plots with FastRweb
... Dear friends, I am working in a web service project which uses integration of Java with R. I have used RJava to connect with Java and that is working fine. As R produces more interactive plots, I would also like to pipe plots generate from R on web page. I came to know that FastRWeb, R2HTML, brew a ...
written 8.6 years ago by MLSC MANIPAL120 • updated 8.6 years ago by Simon Urbanek60
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Which is best among RWebServices and Rserve?
... Dear Friends, We would like to develop a web service in java platform and would like to use Bioconductor R packages through java. Among Rwebservices and RServe, which is better to use? Can any body give more explanation on this? Regards, Prashantha [[alternative HTML version deleted]] ...
rwebservices written 8.7 years ago by MLSC MANIPAL120 • updated 8.7 years ago by Martin Morgan ♦♦ 24k
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Comment: C: error while installing SJava
... Dear Martin, SJava installation worked out fine. Thanks for all the help. Regards, Prashantha Hebbar Manipal Life Sciences Center India On Fri, Mar 18, 2011 at 10:55 AM, Martin Morgan wrote: > On 03/18/2011 02:11 AM, MLSC MANIPAL wrote: > >> *Dear Sir, >> >> >> Wh ...
written 8.7 years ago by MLSC MANIPAL120
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error while installing SJava
... *Dear Sir, When I try to install "SJava", it is giving the following error:* Using R version 2.10.1, biocinstall version 2.5.11. Installing Bioconductor version 2.5 packages: [1] "SJava" Please wait... Warning in install.packages(pkgs = pkgs, repos = repos, ...) : argument 'lib' is missing: usi ...
written 8.7 years ago by MLSC MANIPAL120 • updated 8.7 years ago by Martin Morgan ♦♦ 24k

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Popular Question 7.7 years ago, created a question with more than 1,000 views. For error while installing Java related packages

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