User: Srinivas Srikanth

Reputation:
70
Status:
New User
Location:
Last seen:
6 years, 5 months ago
Joined:
8 years, 5 months ago
Email:
s***********@gmail.com

Posts by Srinivas Srikanth

<prev • 7 results • page 1 of 1 • next >
1
vote
1
answer
1.3k
views
1
answer
Help with DMPFinder in minfi package
... Hello Members, I am using Minfi package to analyze 450k data. I have three different groups of samples and one common control. I did the normalization and other steps according to manual, but stuck at the differential methylation positions. When I use: M <- getM(MSet.norm, type = "beta", betaTh ...
normalization minfi written 6.5 years ago by Srinivas Srikanth70 • updated 6.5 years ago by James W. MacDonald52k
0
votes
1
answer
763
views
1
answers
Answer: A: Question on Analyzing Illumina 450k methylation data
... Dear members, I have methylation data for 4 tumor and 5 normal cases from Illumina 450k array in iDAT format. I used methylumi package to read the idat files in R. I am unable to get a way to export the probes with the intensity values and corresponding genomic position (say TSS200, TSS1500 etc.). ...
written 6.8 years ago by Srinivas Srikanth70
0
votes
1
answer
763
views
1
answer
Question on Analyzing Illumina 450k methylation data
... Dear members, I have methylation data for 4 tumor and 5 normal cases from Illumina 450k array in iDAT format. I used methylumi package to read the idat files in R. I am unable to get a way to export the probes with the intensity values and corresponding genomic position (say TSS200, TSS1500 etc.). ...
methylumi written 6.8 years ago by Srinivas Srikanth70
0
votes
1
answer
485
views
1
answer
2 color microarray decidetests Output
... Hi all, I am working with two color microrray data and have three different stages of cancer along with normal, all normalized with a universal Normal. I analyzed the data using Limma package in R.My workflow is as below: library(limma) targets<-readTargets(filename) RG<-read.maimages(target ...
cancer limma written 7.9 years ago by Srinivas Srikanth70
0
votes
1
answer
485
views
1
answers
Answer: A: 2 color microarray decidetests Output
... An embedded and charset-unspecified text was scrubbed... Name: not available URL: ...
written 7.9 years ago by Srinivas Srikanth70
0
votes
0
answers
566
views
0
answers
Mapping deletions onto chromosome ideograms
... Hi all, I have a set of coordinates for deletions along with the chromosome. I want to show them pictorially on the chromosome. Any help appreciated. I tried using Quantsmooth package but not able to overlay the deletion on the chromosome ideograms. Regards, -- Srinivas Srikanth Ph.D. Student In ...
quantsmooth written 8.2 years ago by Srinivas Srikanth70
0
votes
2
answers
807
views
2
answers
Answer: A: Working with Agilent 4X44k array,two color experiment
... Hi Everyone, I would like to know if we have specific package to work with Agilent 4X44k array just like Affy. Please guide me how one go for generating HeatMaps and other analysis on this data. I am a newbie in this area. Regards, -- Srinivas Srikanth Ph.D. Student Institute of Bioinformatics D ...
written 8.5 years ago by Srinivas Srikanth70

Latest awards to Srinivas Srikanth

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 376 users visited in the last hour