User: Woo, Sangsoon

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Posts by Woo, Sangsoon

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Comment: C: edgeR vs DESeq for comparison without replicate
... Dear David, Thank you so~ much for your explanation and details. I know that it's always a difficult problem when we do not have replicates. I think that I'd better use ranking genes based on their logFC instead of establishing p-value threshold. At least we can see biological differences. Of cours ...
written 8.1 years ago by Woo, Sangsoon20
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edgeR vs DESeq for comparison without replicate
... Dear all, I am working on a ChIP-Seq data set. I want to compare two groups having only one sample each group. (no replicates in both group) I generated count matrix which element is the number of reads within gene region for each data set. I applied edgeR and DESeq methods for this comparison. F ...
edger deseq written 8.1 years ago by Woo, Sangsoon20 • updated 8.1 years ago by Davis McCarthy260

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Great Question 8.1 years ago, created a question with more than 5,000 views. For edgeR vs DESeq for comparison without replicate
Popular Question 8.1 years ago, created a question with more than 1,000 views. For edgeR vs DESeq for comparison without replicate

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