User: Nathan Sheffield

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Posts by Nathan Sheffield

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Comment: C: rtracklayer import.bed pipe inconsistency
... Thanks, I figured it might just come down to updating. And yes, I did mean nonstandard columns -- even though it's not "really" a BED file, it's still helpful to be able to import just the first 3 columns so that my script can handle any type of BED-like file, standard or not. The ability to selec ...
written 7.0 years ago by Nathan Sheffield20
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rtracklayer import.bed pipe inconsistency
... Hi, I am having trouble with importing a bed file after running it through pipe() in R. Maybe it's a bug in rtracklayer's import.bed ? Or maybe I'm missing a setting, can anyone help with this? I have a bed file ("code25.bed") with 4 lines: chr17 60212869 60218774 chr1 108503808 108508915 chr8 863 ...
rtracklayer genomicranges written 7.0 years ago by Nathan Sheffield20 • updated 7.0 years ago by Michael Lawrence10k

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