User: lpascual

gravatar for lpascual
lpascual50
Reputation:
50
Status:
New User
Location:
Last seen:
7 years ago
Joined:
8 years, 2 months ago
Email:
l************@avignon.inra.fr

Posts by lpascual

<prev • 5 results • page 1 of 1 • next >
0
votes
1
answer
808
views
1
answer
Detection copy number variations with cn.MOPS package
... Dear group, I'm trying to detect copy number variations with the cn.MOPS package. I have eight different samples (coming from different individuals re-sequenced by Solexa). Sequences have been mapped against the reference genome with BWA, the genome coverage of my samples ranges from 13x to 6x. I ...
coverage cn.mops written 7.0 years ago by lpascual50 • updated 7.0 years ago by Günter Klambauer540
0
votes
1
answer
1.8k
views
1
answers
Comment: C: EdgeR: Using estimateCommondisp for housekeeping genes
... Dear all, I am starting to analyze the results of a DGE experiment, and I have some doubts about how to perform multi-group comparisons. Our data set consists in just one developmental stage, but I have data from 12 different genotypes (I have duplicates of the samples). I will like to identify a ...
written 8.1 years ago by lpascual50
0
votes
1
answer
933
views
1
answers
Comment: C: edgeR design matrix
... That works perfect, thanks so much Gordon and Mark On 10/14/2011 09:27 PM, Mark Robinson wrote: > Hi Laura, > > I think there was a minor typo there. The glmLRT() call should be: > > lrt<- glmLRT(d,fit,coef=2:8) > > Also, if you wish, you could create your factor with les ...
written 8.2 years ago by lpascual50
0
votes
1
answer
933
views
1
answers
Comment: C: edgeR design matrix
... Hi Gordon, I try it like you said, but I get a mistake, I do not know how to solve it?? Thanks in advance Laura > cultivar <- factor(c(1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8) + ) > design <-model.matrix(~cultivar) > design (Intercept) cultivar2 cultivar3 cultivar4 cultivar5 cultiv ...
written 8.2 years ago by lpascual50
0
votes
1
answer
933
views
1
answer
edgeR design matrix
... Hi all, I am new with RNA-seq data analysis. I have data from illumina DGE experiments from 8 different cultivars (duplicates). I also have 4 extra samples, the F1 hybrids (duplicates), obtained from crossing the 8 cultivars as follows (1x2, 3x4, 5x6, 7x8). In total I have 24 DGE illumina reaction ...
process edger written 8.2 years ago by lpascual50 • updated 8.2 years ago by Gordon Smyth39k

Latest awards to lpascual

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 366 users visited in the last hour