User: Jiayi Sun

gravatar for Jiayi Sun
Jiayi Sun40
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40
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2 years, 7 months ago
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8 years ago
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Posts by Jiayi Sun

<prev • 5 results • page 1 of 1 • next >
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oligo rma() function giving unused argument error
... I am trying to process the Clariom S Human array through oligo and I'm encountering errors at the rma normalization step.   # load relevant packages library(oligo) # read in affy files exonCELs <- list.celfiles(paste0(rootdir, datadir), full.names = TRUE) exonES <- read.celfiles(exonCELs) ...
oligo rma written 2.6 years ago by Jiayi Sun40 • updated 2.6 years ago by James W. MacDonald51k
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Answer: A: loessByCluster returning error in smooth function in bumphunter
... Sorry, I forgot to include the traceback in the last message. Here it is. 10: stop(simpleError(msg, call = expr)) 9: e$fun(obj, substitute(ex), parent.frame(), e$data) 8: list(args = IndexesChunks(.doRNG.stream = c(407L, -129130598L, 1725800531L, 1089509752L, -772932327L, 780595718L, 241179855L ...
written 5.5 years ago by Jiayi Sun40
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loessByCluster returning error in smooth function in bumphunter
... Hello, I have been trying to use bumphunter on my 450k data and I have been running into some problems with the smooth function using the option of loessByCluster. I have tired both other smoothing functions runmedByCluster and locfitByCluster and these perform correctly however I get this error w ...
bumphunter written 5.5 years ago by Jiayi Sun40
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Comment: C: lumi: Methylation450 Data Input
... Thanks a lot for your help, I will try this! On Thu, Nov 3, 2011 at 1:07 PM, Wong, Chao-Jen wrote: > Hi, Jiayi, > > Your "FinalReport.txt" (I guess it is the sample profile output containing > methylation data and other annotation columns) is sufficient to create a > MethyLumiM (no ...
written 8.0 years ago by Jiayi Sun40
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lumi: Methylation450 Data Input
... Hello, I am new to using the lumi program for methylation analysis of the Illumina HumanMethylation450 data. I have the FinalReport.txt output from GenomeStudio. Would this file be sufficient for creating the lumibatch file? I am getting a read warning which returns me: filename <- "FinalRepo ...
lumi written 8.0 years ago by Jiayi Sun40 • updated 8.0 years ago by Chao-Jen Wong580

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