User: Markus Grohme

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Posts by Markus Grohme

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Comment: C: DESeq adjusted pvalue calculation / filtering data
... Hi Simon, Hi Naomi, thanks for your feedback. The filtering removes a really nice chunk of my features: > use <- (rs > quantile(rs, 0.4)) > quantile(rs,0.4) 40% 23 > table(use) use FALSE TRUE 28383 42190 So after filtering my raw pvalues have two peaks in the histogram. One at p=0 a ...
written 6.0 years ago by Markus Grohme20
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DESeq adjusted pvalue calculation / filtering data
... Dear all, Simon Anders kindly asked me to repeat my question on this mailing list considering the statistical analysis of my RNA sequencing data. I am rather new to Bioconductor and RNA sequencing analysis (molecular biologist) and tried to read myself a bit into the statistics behind the analysis ...
sequencing organism qvalue deseq written 6.0 years ago by Markus Grohme20 • updated 6.0 years ago by Naomi Altman6.0k

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Popular Question 6.0 years ago, created a question with more than 1,000 views. For DESeq adjusted pvalue calculation / filtering data

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