User: Mary Ann Allen
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Posts by Mary Ann Allen
... In the "oligo" manual there is a section that describes how to calculate all genes with 2x change or more. This sections uses rowMeans to calculate the average of replicates-"rowMeans(e[, index])". However, since the expression values in eset are in log2, is rowMeans the correct way to calculate ave ...
... R novice here, trying to use DESeq (which is working well, by the way) In the manual "Analysing RNA-Seq data with the\DESeq" package" I followed the directions exactly. However, I get something slightly different. http://bioconductor.org/packages/2.9/bioc/vignettes/DESeq/inst/doc/DES eq.pdf When I ...
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