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tri.counts.method parameter in deconstructSigs
deconstructsigs
updated 5.3 years ago by 0 • written 7.2 years ago by ▴ 90
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4
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1.3k
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Gene clusters based on gene expression across samples
kmeans gene expression clustering
6.5 years ago • updated 6.4 years ago Jane Merlevede ▴ 90
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1.3k
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Answer: A: Gene clusters based on gene expression across samples
6.4 years ago Jane Merlevede ▴ 90
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1.3k
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Answer: A: Gene clusters based on gene expression across samples
6.5 years ago Jane Merlevede ▴ 90
0
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0
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1.3k
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Comment: C: Gene clusters based on gene expression across samples
6.5 years ago Jane Merlevede ▴ 90
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0
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6.4k
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Comment: C: Sample-to-sample distance matrix using heatmap.2
6.5 years ago Jane Merlevede ▴ 90
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4
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6.4k
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Sample-to-sample distance matrix using heatmap.2
heatmap.2 gplots DESeq2
6.6 years ago Jane Merlevede ▴ 90
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1
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6.4k
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Comment: A: Sample-to-sample distance matrix using heatmap.2
6.6 years ago Jane Merlevede ▴ 90
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0
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2.2k
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Comment: C: DESeq2 - experimental design with 2 variables
6.6 years ago Jane Merlevede ▴ 90
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1
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2.2k
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Comment: C: DESeq2 - experimental design with 2 variables
6.6 years ago Jane Merlevede ▴ 90
0
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1
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2.2k
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Comment: A: DESeq2 - experimental design with 2 variables
6.6 years ago Jane Merlevede ▴ 90
0
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7
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2.2k
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DESeq2 - experimental design with 2 variables
deseq2 multiple factor design
6.6 years ago Jane Merlevede ▴ 90
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0
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2.2k
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Comment: A: DESeq2 - experimental design with 2 variables
6.6 years ago Jane Merlevede ▴ 90
1
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4
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3.1k
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clusterProfiler - interpretation of enrichMap
clusterprofiler
updated 6.7 years ago by • 0 • written 7.5 years ago by ▴ 90
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0
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3.1k
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Comment: C: DESeq2 - PCAplot differs between rlog and vsd transformation
6.7 years ago Jane Merlevede ▴ 90
0
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1
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3.1k
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Answer: A: DESeq2 - PCAplot differs between rlog and vsd transformation
6.7 years ago Jane Merlevede ▴ 90
2
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4
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3.1k
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DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2 plotPCA rlog transformation vsd
6.7 years ago Jane Merlevede ▴ 90
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0
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3.7k
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Comment: C: DESeq2 minReplicatesForReplace with different group size
6.9 years ago Jane Merlevede ▴ 90
0
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1
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3.7k
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Comment: C: DESeq2 minReplicatesForReplace with different group size
6.9 years ago Jane Merlevede ▴ 90
2
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6
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3.7k
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DESeq2 minReplicatesForReplace with different group size
DESeq2
6.9 years ago Jane Merlevede ▴ 90
0
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1
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3.7k
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Comment: A: DESeq2 minReplicatesForReplace with different group size
6.9 years ago Jane Merlevede ▴ 90
0
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0
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824
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ConsensusClusterPlus - Intrepretation of item & cluster consensus plots
ConsensusClusterPlus
7.3 years ago Jane Merlevede ▴ 90
0
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0
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1.3k
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ConsensusClusterPlus - add labels to plot
consensusclusterplus
7.3 years ago Jane Merlevede ▴ 90
0
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0
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2.7k
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Comment: C: clusterProfiler - get symbol from GSEA results
7.4 years ago Jane Merlevede ▴ 90
1
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5
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2.7k
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clusterProfiler - get symbol from GSEA results
clusterProfiler
updated 7.4 years ago by ★ 1.2k • written 7.4 years ago by ▴ 90
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2.7k
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Comment: C: clusterProfiler - get symbol from GSEA results
7.4 years ago Jane Merlevede ▴ 90
0
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1
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4.5k
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Comment: C: clusterProfiler - GeneRatio & nb of genes always positively correlated in dotplo
7.4 years ago Jane Merlevede ▴ 90
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1
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4.5k
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Answer: A: clusterProfiler - GeneRatio & nb of genes always positively correlated in dotplo
7.4 years ago Jane Merlevede ▴ 90
3
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7
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4.5k
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clusterProfiler - GeneRatio & nb of genes always positively correlated in dotplot
clusterProfiler
7.4 years ago Jane Merlevede ▴ 90
0
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1
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4.5k
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Answer: A: clusterProfiler - GeneRatio & nb of genes always positively correlated in dotplo
7.4 years ago Jane Merlevede ▴ 90
0
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0
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2.8k
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Comment: C: clusterProfiler - difference in the number of genes from input and enrichGO resu
7.4 years ago Jane Merlevede ▴ 90
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0
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3.2k
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Comment: C: clusterProfiler - qvalue adjustment method in enricher()
7.4 years ago Jane Merlevede ▴ 90
1
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2
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2.8k
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clusterProfiler - difference in the number of genes from input and enrichGO results
clusterProfiler
updated 7.4 years ago by ★ 1.2k • written 7.4 years ago by ▴ 90
0
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2
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3.2k
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clusterProfiler - qvalue adjustment method in enricher()
clusterProfiler
updated 7.4 years ago by ★ 1.2k • written 7.4 years ago by ▴ 90
0
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0
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3.1k
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Answer: A: clusterProfiler - interpretation of enrichMap
7.5 years ago Jane Merlevede ▴ 90
0
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0
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2.4k
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Answer: A: clusterProfiler - interpretation of plotGOgraph
7.5 years ago Jane Merlevede ▴ 90
0
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2
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2.4k
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clusterProfiler - interpretation of plotGOgraph
clusterprofiler topgo
7.5 years ago Jane Merlevede ▴ 90
0
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3
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7.4k
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clusterProfiler - how does showCategory work in dotplot from compareClusterResult class?
clusterprofiler
7.5 years ago Jane Merlevede ▴ 90
0
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0
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7.4k
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Answer: A: clusterProfiler - how does showCategory work in dotplot from compareClusterResul
7.5 years ago Jane Merlevede ▴ 90
0
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0
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1.4k
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Comment: C: Help for defining design and contrasts of shRNA screen data
7.7 years ago Jane Merlevede ▴ 90
0
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1
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1.4k
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Comment: C: Help for defining design and contrasts of shRNA screen data
7.7 years ago Jane Merlevede ▴ 90
0
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1
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1.4k
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Comment: C: Help for defining design and contrasts of shRNA screen data
7.7 years ago Jane Merlevede ▴ 90
0
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1
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1.4k
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Comment: C: Help for defining design and contrasts of shRNA screen data
7.7 years ago Jane Merlevede ▴ 90
0
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1
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1.4k
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Comment: C: Help for defining design and contrasts of shRNA screen data
7.7 years ago Jane Merlevede ▴ 90
0
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1
reply
1.4k
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Comment: C: Help for defining design and contrasts of shRNA screen data
7.7 years ago Jane Merlevede ▴ 90
1
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12
replies
1.4k
views
Help for defining design and contrasts of shRNA screen data
edgeR design and contrast matrix
updated 7.7 years ago by ★ 28k • written 7.7 years ago by ▴ 90
2
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2
replies
1.8k
views
Analysis of shRNA screen data
shrna edger deseq2 differential expression normalized counts
7.7 years ago Jane Merlevede ▴ 90
0
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0
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1.8k
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Answer: A: Analysis of shRNA screen data
7.7 years ago Jane Merlevede ▴ 90
0
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0
replies
1.3k
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Comment: C: Common dispersion from estimateGLMRobustDisp()
7.8 years ago Jane Merlevede ▴ 90
1
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2
replies
1.3k
views
Common dispersion from estimateGLMRobustDisp()
edgeR dispersion
updated 7.8 years ago by ★ 28k • written 7.8 years ago by ▴ 90
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