User: Hector Corrada Bravo
Hector Corrada Bravo • 40
- Reputation:
- 40
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- New User
- Location:
- Last seen:
- 6 years ago
- Joined:
- 7 years, 9 months ago
- Email:
- h*******@umiacs.umd.edu
Posts by Hector Corrada Bravo
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... Hello all,
The brief communication describing the metagenomeSeq package is out in
Nature Methods. metagenomeSeq is designed to determine features (be it
Operational Taxanomic Unit (OTU), species, etc.) that are
differentially
abundant between two or more groups of multiple samples in targeted
metag ...
written 6.1 years ago by
Hector Corrada Bravo • 40
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... Hi David and Evan,
In our experience careful use of ComBat yields good results even for
relatively small RNAseq datasets. For instance, we have modified
ComBat to
not estimate a scale adjustment for batch as this is where the
heteroscedasticity of log-count data is really problematic. If you
want t ...
written 6.4 years ago by
Hector Corrada Bravo • 40
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... The Center for Bioinformatics and Computational Biology at the
University
of Maryland has several faculty openings at all levels. More
information
here: http://cbcb.umd.edu/about-us/news/comp-bio-faculty-positions-
maryland
[[alternative HTML version deleted]]
...
written 7.0 years ago by
Hector Corrada Bravo • 40
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... M$parameters has means and covariance(s) (depending on the model you
specified) for each cluster. You can compute probabilities for any
point using these.
On Fri, Jan 27, 2012 at 10:17 AM, Steve Lianoglou
wrote:
> Hi,
>
> On Fri, Jan 27, 2012 at 9:55 AM, Barbara Uszczynska
> wrote: ...
written 7.7 years ago by
Hector Corrada Bravo • 40
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