User: Hector Corrada Bravo

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Posts by Hector Corrada Bravo

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metagenomeSeq paper out in Nature Methods
... Hello all, The brief communication describing the metagenomeSeq package is out in Nature Methods. metagenomeSeq is designed to determine features (be it Operational Taxanomic Unit (OTU), species, etc.) that are differentially abundant between two or more groups of multiple samples in targeted metag ...
normalization metagenomeseq written 5.6 years ago by Hector Corrada Bravo40
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Answer: A: Bioconductor Digest, Vol 124, Issue 5
... Hi David and Evan, In our experience careful use of ComBat yields good results even for relatively small RNAseq datasets. For instance, we have modified ComBat to not estimate a scale adjustment for batch as this is where the heteroscedasticity of log-count data is really problematic. If you want t ...
written 6.0 years ago by Hector Corrada Bravo40
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Positions at the Center for Bioinformatics and Computational Biology at the University of Maryland
... The Center for Bioinformatics and Computational Biology at the University of Maryland has several faculty openings at all levels. More information here: http://cbcb.umd.edu/about-us/news/comp-bio-faculty-positions- maryland [[alternative HTML version deleted]] ...
written 6.6 years ago by Hector Corrada Bravo40
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Comment: C: probability of a point membership to a certain cluster
... M$parameters has means and covariance(s) (depending on the model you specified) for each cluster. You can compute probabilities for any point using these. On Fri, Jan 27, 2012 at 10:17 AM, Steve Lianoglou wrote: > Hi, > > On Fri, Jan 27, 2012 at 9:55 AM, Barbara Uszczynska > wrote: ...
written 7.3 years ago by Hector Corrada Bravo40

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