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Comment: Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
8 hours ago James W. MacDonald 65k
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118
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Comment: Comment: Error EPICv2 ChAMP
1 day ago James W. MacDonald 65k
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118
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Answer: Answer: Error EPICv2 ChAMP
1 day ago James W. MacDonald 65k
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71
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Answer: Answer: FDR via q-value
1 day ago James W. MacDonald 65k
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137
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Answer: Answer: Error for AnnotationForge makeOrgPackageFromNCBI function
1 day ago James W. MacDonald 65k
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92
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Comment: Comment: Error retrieving ensembl gene id using biomaRt...
4 days ago James W. MacDonald 65k
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92
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Answer: Answer: Error retrieving ensembl gene id using biomaRt...
4 days ago James W. MacDonald 65k
1
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129
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Answer: Answer: OrgDb for maize
4 days ago James W. MacDonald 65k
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115
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Answer: Answer: SNP locus package for mouse?
7 days ago James W. MacDonald 65k
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146
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Answer: Answer: flowStats Search Error
7 days ago James W. MacDonald 65k
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95
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Comment: Comment: what is the sampleFiles
7 days ago James W. MacDonald 65k
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828
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
13 days ago James W. MacDonald 65k
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828
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
13 days ago James W. MacDonald 65k
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2
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828
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Answer: Answer: Convert Seurat Object to Summarised Experiment or ExpressionSet
13 days ago James W. MacDonald 65k
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447
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Comment: Comment: GSVA on separate healthy and disease datasets
13 days ago James W. MacDonald 65k
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391
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Comment: Comment: Not fully paired differential gene expression analysis
13 days ago James W. MacDonald 65k
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317
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Answer: Answer: Why is my gene not significantly differentially expressed?
13 days ago James W. MacDonald 65k
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391
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Answer: Answer: Not fully paired differential gene expression analysis
14 days ago James W. MacDonald 65k
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128
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Answer: Answer: BAM write error in HTSeqGenie
14 days ago James W. MacDonald 65k
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1
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447
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Answer: Answer: GSVA on separate healthy and disease datasets
14 days ago James W. MacDonald 65k
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400
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Comment: Comment: Obtaining pheno data from CEL files
15 days ago James W. MacDonald 65k
2
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280
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Answer: Answer: permutation test in edgeR
15 days ago James W. MacDonald 65k
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158
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Answer: Answer: How can I create a GO plot with ggpubr and clusterProfiler libraries (begginer)
15 days ago James W. MacDonald 65k
1
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227
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Comment: Comment: Lib sizes in the DGE object are different from original lib sizes
17 days ago James W. MacDonald 65k
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1
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288
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Comment: Comment: Help with design.matrix
17 days ago James W. MacDonald 65k
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1
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227
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Answer: Answer: Lib sizes in the DGE object are different from original lib sizes
18 days ago James W. MacDonald 65k
1
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0
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196
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Answer: Answer: MethylKit read issue
18 days ago James W. MacDonald 65k
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1
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288
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Answer: Answer: Help with design.matrix
18 days ago James W. MacDonald 65k
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141
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Comment: Comment: What to the log 2 fold changes mean using LRT on time course in DESeq2
18 days ago James W. MacDonald 65k
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141
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Answer: Answer: What to the log 2 fold changes mean using LRT on time course in DESeq2
18 days ago James W. MacDonald 65k
1
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0
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152
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Answer: Answer: DESeq2 - Missing values in count matrix
19 days ago James W. MacDonald 65k
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400
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Comment: Comment: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
20 days ago James W. MacDonald 65k
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400
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Answer: Answer: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
20 days ago James W. MacDonald 65k
0
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1
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166
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Answer: Answer: voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
20 days ago James W. MacDonald 65k
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400
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Comment: Comment: Obtaining pheno data from CEL files
21 days ago James W. MacDonald 65k
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303
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Comment: Comment: unable to access Annotationhub latest record
21 days ago James W. MacDonald 65k
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1
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400
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Comment: Comment: Obtaining pheno data from CEL files
21 days ago James W. MacDonald 65k
0
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1
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303
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Answer: Answer: unable to access Annotationhub latest record
21 days ago James W. MacDonald 65k
0
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0
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135
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Comment: Comment: No output from read.bismark with bismark cov.files
21 days ago James W. MacDonald 65k
0
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1
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149
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Answer: Answer: pca with VST of DESeq2 give 100% variance in PC1
21 days ago James W. MacDonald 65k
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120
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Answer: Answer: Multiple affymatrix IDs mapping to a single gene name
21 days ago James W. MacDonald 65k
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2
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341
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Comment: Comment: Internet connection for Bioconductor packages in Rstudio in Iran...
21 days ago James W. MacDonald 65k
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1
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341
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Comment: Comment: Internet connection for Bioconductor packages in Rstudio in Iran...
22 days ago James W. MacDonald 65k
0
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0
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95
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Answer: Answer: Brachypodium distachyon db
22 days ago James W. MacDonald 65k
0
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1
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163
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Answer: Answer: How to make GSEAplot with chip set
22 days ago James W. MacDonald 65k
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1
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164
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Answer: Answer: Gene Ontology doubt
22 days ago James W. MacDonald 65k
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0
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294
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Comment: Comment: fgsea fork
25 days ago James W. MacDonald 65k
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1
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162
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Answer: Answer: Minfi - estimatecellscount
25 days ago James W. MacDonald 65k
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0
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211
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Answer: Answer: WGCNA: analysis of complex trait associations with regressions
26 days ago James W. MacDonald 65k
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0
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115
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Answer: Answer: Trimming a section of a scaffold from a genome
26 days ago James W. MacDonald 65k
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