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Answer: Answer: DESeq2 for 16S rRNA Analysis
8 days ago James W. MacDonald 68k
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352
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Answer: Answer: When to use edgeR or limma
23 days ago James W. MacDonald 68k
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945
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Comment: Comment: Joining different datasets and analyzing using the group-specific condition effe
24 days ago James W. MacDonald 68k
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945
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Comment: Comment: Joining different datasets and analyzing using the group-specific condition effe
25 days ago James W. MacDonald 68k
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0
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311
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Answer: Answer: problem reading bam files into nucleR
9 weeks ago James W. MacDonald 68k
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1
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328
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Comment: Comment: Getting a large intercept with DESeq2
12 weeks ago James W. MacDonald 68k
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1
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328
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Answer: Answer: Getting a large intercept with DESeq2
12 weeks ago James W. MacDonald 68k
2
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0
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660
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Comment: Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
3 months ago James W. MacDonald 68k
2
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1
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199
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Answer: Answer: Suppress warning in RHDF5 write
3 months ago James W. MacDonald 68k
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326
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Answer: Answer: Integration: Paired-end vs healthy single-end from a different source
3 months ago James W. MacDonald 68k
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1
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4.9k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
3 months ago James W. MacDonald 68k
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1
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4.9k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
3 months ago James W. MacDonald 68k
0
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1
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4.9k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
3 months ago James W. MacDonald 68k
0
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1
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4.9k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
3 months ago James W. MacDonald 68k
0
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1
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374
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Answer: Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
3 months ago James W. MacDonald 68k
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0
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374
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Comment: Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
3 months ago James W. MacDonald 68k
0
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0
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210
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Answer: Answer: Gatins Set error
4 months ago James W. MacDonald 68k
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0
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737
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Comment: Comment: GO.db and others package Download failure
4 months ago James W. MacDonald 68k
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1
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737
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Comment: Comment: GO.db and others package Download failure
4 months ago James W. MacDonald 68k
0
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1
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737
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Comment: Comment: GO.db and others package Download failure
4 months ago James W. MacDonald 68k
0
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1
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737
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Answer: Answer: GO.db and others package Download failure
4 months ago James W. MacDonald 68k
0
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0
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1.6k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
4 months ago James W. MacDonald 68k
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1
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1.6k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
4 months ago James W. MacDonald 68k
0
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0
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267
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Answer: Answer: Differential motif analysis
4 months ago James W. MacDonald 68k
1
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0
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489
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Comment: Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
4 months ago James W. MacDonald 68k
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1
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578
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Comment: Comment: DESeq2 interactions
4 months ago James W. MacDonald 68k
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1
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325
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Answer: Answer: readBam vs read_bam_insert_metrics
4 months ago James W. MacDonald 68k
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1
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489
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Answer: Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
4 months ago James W. MacDonald 68k
1
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2
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425
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Answer: Answer: ROAST compare results with complex design
5 months ago James W. MacDonald 68k
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0
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1.2k
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Comment: Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
5 months ago James W. MacDonald 68k
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1
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1.2k
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Comment: Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
5 months ago James W. MacDonald 68k
0
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0
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312
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Answer: Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel
5 months ago James W. MacDonald 68k
2
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1
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1.2k
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Answer: Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
5 months ago James W. MacDonald 68k
0
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0
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13k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
5 months ago James W. MacDonald 68k
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13k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
5 months ago James W. MacDonald 68k
0
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1
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2.3k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
5 months ago James W. MacDonald 68k
0
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1
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806
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
5 months ago James W. MacDonald 68k
0
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1
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806
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
5 months ago James W. MacDonald 68k
0
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1
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806
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
5 months ago James W. MacDonald 68k
0
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1
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806
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
5 months ago James W. MacDonald 68k
0
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1
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806
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Answer: Answer: Getting way too many DEGs with LRT for time-series RNA-seq!
5 months ago James W. MacDonald 68k
0
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0
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460
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Comment: Comment: Create consensusMatrix for codon bases
5 months ago James W. MacDonald 68k
0
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0
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939
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
5 months ago James W. MacDonald 68k
1
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1
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310
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Answer: Answer: The default value of 'abundanceCol'
6 months ago James W. MacDonald 68k
1
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1
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939
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
6 months ago James W. MacDonald 68k
2
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1
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939
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Answer: Answer: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
6 months ago James W. MacDonald 68k
0
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1
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939
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
6 months ago James W. MacDonald 68k
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0
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263
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Answer: Answer: muffz.plot2
6 months ago James W. MacDonald 68k
0
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0
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644
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Comment: Comment: Feedback needed on new user-friendly BED file tool
6 months ago James W. MacDonald 68k
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2
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625
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Answer: Answer: DEP R-package run_app ("TMT") spits this error: "Error: 'imputeMethods' is not a
6 months ago James W. MacDonald 68k
8,874 results • Page 1 of 178
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