Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
0
votes
0
replies
337
views
Answer: Answer: Use of org.Rn.eg.db with GRCr8 reference genome
2 days ago James W. MacDonald 68k
0
votes
0
replies
387
views
Answer: Answer: Clarification on GOALL / GO2ALLORFs mapping
2 days ago James W. MacDonald 68k
1
vote
0
replies
668
views
Answer: Answer: Limma - Complex 2-way multi-level contrast with paired samples
4 days ago James W. MacDonald 68k
0
votes
0
replies
384
views
Answer: Answer: Using tximport for kallisto aligned TOIL data
6 days ago James W. MacDonald 68k
0
votes
0
replies
252
views
Answer: Answer: Reading gene expression data in GPR format and converting it to xlsx format
6 days ago James W. MacDonald 68k
1
vote
1
reply
679
views
Answer: Answer: Differential expression of proteins using somascan data
9 days ago James W. MacDonald 68k
0
votes
0
replies
210
views
Answer: Answer: library org.Hs.eg.db failing to install
10 days ago James W. MacDonald 68k
0
votes
1
reply
307
views
Answer: Answer: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package
10 days ago James W. MacDonald 68k
0
votes
0
replies
115
views
Answer: Answer: myvariant error
12 days ago James W. MacDonald 68k
0
votes
1
reply
171
views
Answer: Answer: Conumee2 - CNV.summaryplot()
12 days ago James W. MacDonald 68k
0
votes
0
replies
194
views
Answer: Answer: pairedGSEA input files
17 days ago James W. MacDonald 68k
2
votes
1
reply
974
views
Answer: Answer: Group-specific condition effects with individuals nested: matrix is not full ra
17 days ago James W. MacDonald 68k
0
votes
0
replies
157
views
Answer: Answer: TheProcess got Killed
17 days ago James W. MacDonald 68k
0
votes
0
replies
313
views
Answer: Answer: How to adjust for Cell Type Differences between groups in Pseudo-Bulk Differenti
19 days ago James W. MacDonald 68k
1
vote
1
reply
522
views
Answer: Answer: normalizatino of dna methylation EPIC data
24 days ago James W. MacDonald 68k
0
votes
1
reply
334
views
Answer: Answer: WGCNA
24 days ago James W. MacDonald 68k
0
votes
0
replies
192
views
Answer: Answer: Pathview visualisation not including positive log2 fold changes
25 days ago James W. MacDonald 68k
1
vote
0
replies
461
views
Answer: Answer: UniProt.ws query for single UniRef90 ID takes several minutes
26 days ago James W. MacDonald 68k
0
votes
2
replies
400
views
Answer: Answer: batch effect removal for agilent microarray data
26 days ago James W. MacDonald 68k
2
votes
1
reply
996
views
Answer: Answer: Store Matrix in DataFrame Cell
4 weeks ago James W. MacDonald 68k
0
votes
2
replies
513
views
Answer: Answer: DESeq2 adujsted p-value cutoff seemingly not working
5 weeks ago James W. MacDonald 68k
1
vote
1
reply
780
views
Answer: Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
5 weeks ago James W. MacDonald 68k
0
votes
0
replies
297
views
Answer: Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes
5 weeks ago James W. MacDonald 68k
0
votes
1
reply
442
views
Answer: Answer: displaying the differential expression with deseq2 over 4X2 samples with the in
5 weeks ago James W. MacDonald 68k
0
votes
0
replies
202
views
Answer: Answer: I am having issues with bowtie2_build
6 weeks ago James W. MacDonald 68k
1
vote
0
replies
471
views
Answer: Answer: Selection of correct coefficients or contrasts in DESeq2
7 weeks ago James W. MacDonald 68k
0
votes
0
replies
186
views
Answer: Answer: Unable to find sample sheet file for ChAMP methylation data analysis
7 weeks ago James W. MacDonald 68k
0
votes
0
replies
165
views
Answer: Answer: affymetrix
7 weeks ago James W. MacDonald 68k
3
votes
2
replies
1.2k
views
Answer: Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
8 weeks ago James W. MacDonald 68k
0
votes
0
replies
179
views
Answer: Answer: XCMS Data Processing
8 weeks ago James W. MacDonald 68k
0
votes
1
reply
659
views
Answer: Answer: Error using useMart or useEnsembl
8 weeks ago James W. MacDonald 68k
2
votes
0
replies
587
views
Answer: Answer: Error in download.file for TCGAutils::symbolsToRanges
8 weeks ago James W. MacDonald 68k
0
votes
1
reply
747
views
Answer: Answer: Biomart and ensembl not working?
8 weeks ago James W. MacDonald 68k
0
votes
0
replies
160
views
Answer: Answer: Unknown gene transcripts after annotatr
8 weeks ago James W. MacDonald 68k
0
votes
0
replies
474
views
Answer: Answer: DESeq2 Heatmap
8 weeks ago James W. MacDonald 68k
0
votes
0
replies
157
views
Answer: Answer: Improve performance of qusage aggregateGeneSet
8 weeks ago James W. MacDonald 68k
0
votes
0
replies
136
views
Answer: Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000
8 weeks ago James W. MacDonald 68k
0
votes
1
reply
481
views
Answer: Answer: iam not able to do retrive data using GEOquery R package
9 weeks ago James W. MacDonald 68k
0
votes
0
replies
228
views
Answer: Answer: Installation error for Rsamtools.
9 weeks ago James W. MacDonald 68k
1
vote
1
reply
871
views
Answer: Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
9 weeks ago James W. MacDonald 68k
0
votes
1
reply
1.0k
views
Answer: Answer: Why did PCA plots look exactly the same after adjusting for batch covariate in D
9 weeks ago James W. MacDonald 68k
0
votes
1
reply
363
views
Answer: Answer: Diffbind interpretation of data - fold change
9 weeks ago James W. MacDonald 68k
0
votes
0
replies
219
views
Answer: Answer: No preprocessing allowed for EPICv2 with DMRcate
9 weeks ago James W. MacDonald 68k
0
votes
1
reply
331
views
Answer: Answer: Newbie Question - adding metadata to an analysis
9 weeks ago James W. MacDonald 68k
0
votes
1
reply
353
views
Answer: Answer: MissMethyl failed to use gometh function for EPICv2
9 weeks ago James W. MacDonald 68k
0
votes
1
reply
2.2k
views
Answer: Answer: nightmare to make custom txdb for genomes from ToxoDB
12 weeks ago James W. MacDonald 68k
0
votes
0
replies
355
views
Answer: Answer: Build error on kunpeng2 Linux aarch64
3 months ago James W. MacDonald 68k
1
vote
1
reply
660
views
Answer: Answer: Deseq2 Design
3 months ago James W. MacDonald 68k
0
votes
0
replies
926
views
Answer: Answer: Cannot install GO.db and org.Hs.eg.db
3 months ago James W. MacDonald 68k
0
votes
2
replies
676
views
Answer: Answer: p value is 0, padj is 0
3 months ago James W. MacDonald 68k
5,328 results • Page 1 of 107
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6