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Answer: Answer: SNP locus package for mouse?
2 days ago James W. MacDonald 65k
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Answer: Answer: flowStats Search Error
2 days ago James W. MacDonald 65k
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2
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760
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Answer: Answer: Convert Seurat Object to Summarised Experiment or ExpressionSet
8 days ago James W. MacDonald 65k
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Answer: Answer: Why is my gene not significantly differentially expressed?
8 days ago James W. MacDonald 65k
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Answer: Answer: Not fully paired differential gene expression analysis
9 days ago James W. MacDonald 65k
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120
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Answer: Answer: BAM write error in HTSeqGenie
9 days ago James W. MacDonald 65k
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427
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Answer: Answer: GSVA on separate healthy and disease datasets
9 days ago James W. MacDonald 65k
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257
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Answer: Answer: permutation test in edgeR
10 days ago James W. MacDonald 65k
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146
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Answer: Answer: How can I create a GO plot with ggpubr and clusterProfiler libraries (begginer)
10 days ago James W. MacDonald 65k
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219
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Answer: Answer: Lib sizes in the DGE object are different from original lib sizes
13 days ago James W. MacDonald 65k
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189
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Answer: Answer: MethylKit read issue
13 days ago James W. MacDonald 65k
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280
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Answer: Answer: Help with design.matrix
13 days ago James W. MacDonald 65k
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130
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Answer: Answer: What to the log 2 fold changes mean using LRT on time course in DESeq2
13 days ago James W. MacDonald 65k
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144
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Answer: Answer: DESeq2 - Missing values in count matrix
14 days ago James W. MacDonald 65k
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391
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Answer: Answer: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
15 days ago James W. MacDonald 65k
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161
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Answer: Answer: voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
15 days ago James W. MacDonald 65k
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287
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Answer: Answer: unable to access Annotationhub latest record
16 days ago James W. MacDonald 65k
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140
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Answer: Answer: pca with VST of DESeq2 give 100% variance in PC1
16 days ago James W. MacDonald 65k
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111
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Answer: Answer: Multiple affymatrix IDs mapping to a single gene name
16 days ago James W. MacDonald 65k
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90
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Answer: Answer: Brachypodium distachyon db
17 days ago James W. MacDonald 65k
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153
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Answer: Answer: How to make GSEAplot with chip set
17 days ago James W. MacDonald 65k
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156
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Answer: Answer: Gene Ontology doubt
17 days ago James W. MacDonald 65k
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154
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Answer: Answer: Minfi - estimatecellscount
20 days ago James W. MacDonald 65k
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204
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Answer: Answer: WGCNA: analysis of complex trait associations with regressions
21 days ago James W. MacDonald 65k
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107
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Answer: Answer: Trimming a section of a scaffold from a genome
22 days ago James W. MacDonald 65k
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472
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Answer: Answer: Microarray Limma Model fitting and DEG
23 days ago James W. MacDonald 65k
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207
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Answer: Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
23 days ago James W. MacDonald 65k
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151
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Answer: Answer: bioconductor emailing list
24 days ago James W. MacDonald 65k
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188
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Answer: Answer: How to extract counts from a DESeq dataset ordered by a specific sample?
24 days ago James W. MacDonald 65k
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409
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Answer: Answer: Batch Effect Correction, Gene Filtering
27 days ago James W. MacDonald 65k
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190
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Answer: Answer: Non-empty droplets versus good quality cells
4 weeks ago James W. MacDonald 65k
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202
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Answer: Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
4 weeks ago James W. MacDonald 65k
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231
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Answer: Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
4 weeks ago James W. MacDonald 65k
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359
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Answer: Answer: Unable to annotate ExpressionSet object from hugene11st chip
4 weeks ago James W. MacDonald 65k
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174
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Answer: Answer: Perfoming clumping using ieugwasr package
4 weeks ago James W. MacDonald 65k
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155
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Answer: Answer: problem with ClusterRepro function
5 weeks ago James W. MacDonald 65k
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251
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Answer: Answer: Error in classify_gene_pairs
5 weeks ago James W. MacDonald 65k
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132
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Answer: Answer: Is random access by row index possible for an indexed VCF file?
5 weeks ago James W. MacDonald 65k
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230
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Answer: Answer: supportedOrganisms() in goseq producing Error in names(trackIds)
6 weeks ago James W. MacDonald 65k
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169
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Answer: Answer: Error with BSgenome, wanting to analyse non-model species with ATACseqQC
6 weeks ago James W. MacDonald 65k
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2
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363
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Answer: Answer: DESeq and SVA for batch effect
6 weeks ago James W. MacDonald 65k
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314
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Answer: Answer: Factor vs Character in design
6 weeks ago James W. MacDonald 65k
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143
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Answer: Answer: error in Matrix function
6 weeks ago James W. MacDonald 65k
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276
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Answer: Answer: Would I treat surrogate variables as batches?
6 weeks ago James W. MacDonald 65k
2
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415
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Answer: Answer: DGE analysis with LIMMA
6 weeks ago James W. MacDonald 65k
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227
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Answer: Answer: Changed DESeq2 comparison value but the heatmap is still the same
7 weeks ago James W. MacDonald 65k
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365
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Answer: Answer: Estimating Cell Counts for EPIC V2 array data
7 weeks ago James W. MacDonald 65k
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311
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Answer: Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms
7 weeks ago James W. MacDonald 65k
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160
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Answer: Answer: Matrix multiplication error to estimate telomere length
7 weeks ago James W. MacDonald 65k
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255
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Answer: Answer: impute.knn produces different results based on matrix order
7 weeks ago James W. MacDonald 65k
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