User: Juan L. Mateo

gravatar for Juan L. Mateo
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5 years, 10 months ago
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6 years ago
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j*********@cos.uni-heidelberg.de

Posts by Juan L. Mateo

<prev • 8 results • page 1 of 1 • next >
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Comment: C: ggbio: error when updating to current release version
... Hi, I don't know which one (or ones) of the new packages is essential because I installed all of them at once and not one by one to check the result of trying to update ggbio. Since this problem could not be reproduced, I guess that it is a specific misconfiguration of my system but I can't tell wh ...
written 5.8 years ago by Juan L. Mateo80
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Comment: C: ggbio: error when updating to current release version
... Hi, I came to this problem when I was updating all my bioconductor packages (biocLite(character(), ask=FALSE)) and I had already the previous version of ggbio installed and working. The update was all right but for ggbio. Best, Juan On 04/18/2012 05:39 PM, Martin Morgan wrote: > On 4/18/2012 5: ...
written 5.8 years ago by Juan L. Mateo80
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Comment: C: ggbio: error when updating to current release version
... Hi Vincent, If I install manually all the packages that are listed in your sessionInfo I can install ggbio but with warnings. These warnings remain when I load the module. Appart from that I have tested several functions of ggbio and they seem to work properly. Thanks for the answer Juan > bi ...
written 5.8 years ago by Juan L. Mateo80
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ggbio: error when updating to current release version
... Dear all, I tried to update the package ggbio from version 1.0.4 to the current release version 1.2.8 but there seems to be an error. I list below the error output and sessionInfo(). I tried also to use the development version (1.3.4) but I get the same problem. Best regards > source("http:/ ...
biocinstaller ggbio written 5.8 years ago by Juan L. Mateo80 • updated 5.8 years ago by Vincent J. Carey, Jr.6.2k
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Comment: C: htSeqTools errors
... Hi Oscar, I am aware of the purpose of the cmds function but I got the same error when I have several samples, so, for simplicity, I posted this example with only one sample. I am already using the development version as you can see from the sessionInfo() output at the end of my first email. As I ...
written 6.0 years ago by Juan L. Mateo80
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Comment: C: htSeqTools errors
... Hi Valerie, Thanks for you answer. This object contains 16M reads and I am happy to provide any information that would be useful or even this object which is 206Mb big. > sapply(samples,nrow) Con_input 16513449 Best, Juan On 02/20/2012 08:08 PM, Valerie Obenchain wrote: > Hi Juan, > ...
written 6.0 years ago by Juan L. Mateo80
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htSeqTools errors
... Hi all, I am trying to use htSeqTools to analyse some ChIP-seq samples and I am getting errors on the methods cmds and giniCoverage. Below I paste the output of a session. Any help will be greatly appreciated. > what=c("rname", "strand", "pos", "qwidth") > param=ScanBamParam(what = what) ...
coverage htseqtools written 6.0 years ago by Juan L. Mateo80 • updated 6.0 years ago by Valerie Obenchain ♦♦ 6.4k
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GenomicRanges requires a IRanges version not available in the repository
... Hi all, I need to install the package htSeqTools from the BioConductor version 2.10. This package, among others, requires GenomicRanges, but the installation of this last fails because it requires a higher version of IRanges than the one in the repository. The error that I get is below: ========= ...
genomicranges htseqtools written 6.0 years ago by Juan L. Mateo80 • updated 6.0 years ago by Vincent J. Carey, Jr.6.2k

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