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Answer: A: sample ids not matching when creating SeqVarData object
4.8 years ago Stephanie M. Gogarten ▴ 870
2
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4
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1.5k
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sample ids not matching when creating SeqVarData object
seqvartools
4.8 years ago Stephanie M. Gogarten ▴ 870
1
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1
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2.7k
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Comment: C: Genesis: doubts with admixMAPMM
5.0 years ago Stephanie M. Gogarten ▴ 870
1
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1
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2.7k
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Comment: C: Genesis: doubts with admixMAPMM
5.0 years ago Stephanie M. Gogarten ▴ 870
1
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2
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2.7k
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Comment: C: Genesis: doubts with admixMAPMM
5.0 years ago Stephanie M. Gogarten ▴ 870
2
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2
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2.7k
views
Answer: A: Genesis: doubts with admixMAPMM
5.0 years ago Stephanie M. Gogarten ▴ 870
1
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0
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1.5k
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Answer: A: VCF file does not include snp.id, can I still run SNPRelate for Relatedness Anal
5.1 years ago Stephanie M. Gogarten ▴ 870
0
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1
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906
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betas for binary outcome
genesis
5.1 years ago Stephanie M. Gogarten ▴ 870
0
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0
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906
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Answer: A: betas for binary outcome
5.1 years ago Stephanie M. Gogarten ▴ 870
1
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0
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963
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Answer: A: PCA axis description SNPRelate
5.1 years ago Stephanie M. Gogarten ▴ 870
0
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1
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2.2k
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Comment: C: GENESIS pcrelate() write gds file doesn't work
5.1 years ago Stephanie M. Gogarten ▴ 870
0
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3
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2.2k
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Comment: C: GENESIS pcrelate() write gds file doesn't work
5.1 years ago Stephanie M. Gogarten ▴ 870
0
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1
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2.2k
views
Comment: C: GENESIS pcrelate() write gds file doesn't work
5.1 years ago Stephanie M. Gogarten ▴ 870
0
votes
0
replies
929
views
Comment: C: SeqArray problem in seqVCF2GDS and convert back to vcf
5.1 years ago Stephanie M. Gogarten ▴ 870
0
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1
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2.2k
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Answer: A: GENESIS pcrelate() write gds file doesn't work
5.1 years ago Stephanie M. Gogarten ▴ 870
1
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0
replies
1.8k
views
Answer: A: Imputed dosages in GENESIS
5.2 years ago Stephanie M. Gogarten ▴ 870
4
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2
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1.8k
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Imputed dosages in GENESIS
genesis gwastools seqarray
5.5 years ago • updated 5.2 years ago Stephanie M. Gogarten ▴ 870
1
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0
replies
894
views
Answer: A: GENESIS pcrelate() to load gds file and continue where the function broke
5.5 years ago Stephanie M. Gogarten ▴ 870
0
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1
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1.8k
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Comment: C: GENESIS: king2mat: subscript out of bounds
5.5 years ago Stephanie M. Gogarten ▴ 870
0
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1
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1.8k
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Comment: C: GENESIS: king2mat: subscript out of bounds
5.5 years ago Stephanie M. Gogarten ▴ 870
1
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0
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1.8k
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Answer: A: Imputed dosages in GENESIS
5.5 years ago Stephanie M. Gogarten ▴ 870
0
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0
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895
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Answer: A: Using previously calculated PCs in GENESIS
5.6 years ago Stephanie M. Gogarten ▴ 870
0
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1
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895
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Using previously calculated PCs in GENESIS
genesis snprelate
5.6 years ago Stephanie M. Gogarten ▴ 870
0
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0
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1.2k
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Comment: C: GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for thi
5.6 years ago Stephanie M. Gogarten ▴ 870
0
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0
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1.3k
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Answer: A: Seq Array converting VCF to GDS using seqVCF2GDS, unable to find file problems w
5.7 years ago Stephanie M. Gogarten ▴ 870
0
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0
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773
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Answer: A: selecting SNPs and samples in GENESIS
5.7 years ago Stephanie M. Gogarten ▴ 870
0
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1
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773
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selecting SNPs and samples in GENESIS
genesis
5.7 years ago Stephanie M. Gogarten ▴ 870
0
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0
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2.7k
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Comment: C: Replacement for lapply on a GRanges?
5.9 years ago Stephanie M. Gogarten ▴ 870
1
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5
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2.7k
views
Replacement for lapply on a GRanges?
genomicranges
updated 5.9 years ago by 16k • written 5.9 years ago by ▴ 870
1
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1
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1.6k
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Comment: C: GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
5.9 years ago Stephanie M. Gogarten ▴ 870
1
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3
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1.6k
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Comment: C: GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
5.9 years ago Stephanie M. Gogarten ▴ 870
0
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1
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1.8k
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Answer: A: GENESIS: king2mat: subscript out of bounds
6.0 years ago Stephanie M. Gogarten ▴ 870
0
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7
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1.8k
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GENESIS: king2mat: subscript out of bounds
genesis
6.0 years ago Stephanie M. Gogarten ▴ 870
0
votes
1
reply
892
views
GWASTools vcfWrite function
gwastools
6.0 years ago Stephanie M. Gogarten ▴ 870
0
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0
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892
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Answer: A: GWASTools vcfWrite function
6.0 years ago Stephanie M. Gogarten ▴ 870
0
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1
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1.8k
views
Answer: A: how to save subsetted GDS file
6.0 years ago Stephanie M. Gogarten ▴ 870
0
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0
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1.5k
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Answer: A: Error converting vcf to gds
6.1 years ago Stephanie M. Gogarten ▴ 870
1
vote
0
replies
796
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Answer: A: Missing normalized x, normalized y, baf and logrrratio values
6.1 years ago Stephanie M. Gogarten ▴ 870
0
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0
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1.5k
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Comment: C: Importing affymetrix genotype calls with GWASTools
6.2 years ago Stephanie M. Gogarten ▴ 870
0
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1
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1.9k
views
Answer: A: SeqArray_1.19.2, SeqArray::info() for example gds data does not return correct c
6.3 years ago Stephanie M. Gogarten ▴ 870
0
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0
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1.5k
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Answer: A: Question on 'gdsSubset' function
6.5 years ago Stephanie M. Gogarten ▴ 870
0
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0
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1.8k
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Answer: A: Creating Intensity GDS file for the R package GWAStools
6.7 years ago Stephanie M. Gogarten ▴ 870
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1
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2.2k
views
Comment: C: Error using readVcf
6.8 years ago Stephanie M. Gogarten ▴ 870
0
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1
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2.2k
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Answer: A: Error using readVcf
6.8 years ago Stephanie M. Gogarten ▴ 870
1
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1
reply
1.8k
views
Answer: A: "set genotype" function for gds?
7.2 years ago Stephanie M. Gogarten ▴ 870
0
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1
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3.7k
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Comment: C: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
7.4 years ago Stephanie M. Gogarten ▴ 870
0
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0
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3.7k
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Comment: C: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
7.4 years ago Stephanie M. Gogarten ▴ 870
0
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0
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3.7k
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Comment: C: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
7.4 years ago Stephanie M. Gogarten ▴ 870
0
votes
3
replies
3.7k
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Comment: C: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
7.4 years ago Stephanie M. Gogarten ▴ 870
1
vote
1
reply
3.7k
views
Answer: A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
8.0 years ago Stephanie M. Gogarten ▴ 870
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