User: Yao,Hui

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Yao,Hui40
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40
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New User
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Last seen:
7 years, 5 months ago
Joined:
7 years, 8 months ago
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h***@mdanderson.org

Posts by Yao,Hui

<prev • 4 results • page 1 of 1 • next >
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Comment: C: A question with DEXSeq package: inconsistency between normalized counts vs. fitt
... Dear Alejandro, It works now. Thanks a lot! Hui On Jun 26, 2012, at 11:28 AM, Alejandro Reyes wrote: levels( pData(testgene)$type ) <- sort( levels( pData(testgene)$type ) ) [[alternative HTML version deleted]] ...
written 7.4 years ago by Yao,Hui40
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Comment: C: A question with DEXSeq package: inconsistency between normalized counts vs. fitt
... Dear Alejandro, Thanks a lot for quick reply! First I appreciate that you pinpoint the typo and will correct it in the analysis. Then I will send you the toBioConductor.RData and the code in a separate e-mail to avoid exceeding the limit of bio-conductor email size. Thanks again, Hui On Jun 26 ...
written 7.4 years ago by Yao,Hui40
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A question with DEXSeq package: inconsistency between normalized counts vs. fitted expression, fitted splicing or fold changes
... Dear DEXSeq authors and users, I am using DEXSeq package (1.2.0) to do splicing analysis for human genome. One part of results from the analysis is really confusing me. It seems that for many genes the fitted expression, the fitted splicing and estimated fold changes are inconsistent (actually reve ...
cancer dexseq written 7.4 years ago by Yao,Hui40 • updated 7.4 years ago by Alejandro Reyes1.7k
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Errors for estimateGLMTrendedDisp and estimateGLMCommonDisp functions in the edgeR package
... Dear edgeR authors and users, I am using the currently-released version of edgeR, edgeR_2.6.0. When I tried to estimate common dispersions and trended dispersions for my RNA-seq data, I found the errors. I am listing them as below. Any suggestions are more than welcome! ### cnts contains the count ...
cancer edger written 7.7 years ago by Yao,Hui40 • updated 7.7 years ago by Gordon Smyth39k

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